4.3 Congenital anomalies of the nervous system: Microcephaly
Microcephaly (microcephalus) describes a cranial vault that is smaller than normal for the infant’s sex and gestational age at birth (congenital). The size of the cranial vault is an indicator of the size of the underlying brain. Microcephaly can be diagnosed prenatally but is more often diagnosed after delivery. Fig. 4.12 shows newborns with normal head size, microcephaly, and severe microcephaly, and the correct position of a tape to measure the head circumference.
Fig. 4.12. Microcephaly

Relevant ICD-10 codes
Q02 Microcephaly
Diagnosis
Prenatal. Transabdominal ultrasound between 18 and 37 weeks’gestation might identify a small head size, with serial ultrasounds showing poor growth over time. Measurement of the fetal head circumference (HC) and biparietal diameter should be made on the axial image through the thalami at the level of the cavum septi pellucidi.
Postnatal. At delivery, a measurement of the occipito-frontal circumference or HC that is three standard deviations below the mean for the age- and sex-appropriate distribution curves is diagnostic of severe microcephaly. See the link below on how best to measure HC at birth.
Report if using a different definition or cut-off point (e.g. two standard deviations below the mean).
Cranial ultrasound, CT or MRI scans can confirm the diagnosis of an underlying brain abnormality.
Clinical and epidemiologic notes
Timing of measurement. Although head molding and/or swelling can occur during the birthing process, HC measurements should be obtained within the first 24 hours of life. Standards for HC are based on early measurements (i.e. INTERGROWTH-21st measurements were obtained before 12 hours of life and WHO measurements were obtained before 24 hours of life). Therefore, postponing HC measurements until after 24 hours of life to allow for birth process changes to subside results in not having appropriate comparison standards.
Calculating the percentile of HC. The INTERGROWTH-21st project provides data on HC based on a multicenter, multi-ethnic and population-based project. The online tool (http://intergrowth21.ndog.ox.ac.ukexternal icon) can be used to enter data to calculate the percentile of the HC or to compare to standards based on the infant’s sex and gestational age (28).
Causes. Microcephaly is occasionally a normal trait in a family, so measuring parents’ HC if possible is reasonable. Many genetic syndromes are associated with microcephaly (> 1000 matches in www.OMIM.orgexternal icon) (29). Teratogenic conditions that can cause microcephaly include congenital rubella (P35.0), congenital cytomegalovirus (cCMV) (P35.1), congenital Zika (P35.4) and congenital toxoplasmosis (P37.1) infections. Detailed imaging and expert consultations (e.g. paediatric geneticist, paediatric neurologist) can help identify underlying causes of microcephaly.
Inclusions
Q02 Microcephaly
Exclusions
Small brain – without confirmation of HC measurement demonstrating microcephaly.
Microcephaly associated with anencephaly or encephalocele.
Acquired microcephaly; for example, secondary to a birth or delivery complication, postnatal insult or trauma, neonatal meningitis, and birth asphyxia.
Checklist for high-quality reporting
Microcephaly – Documentation Checklist |
Describe in detail:
Report whether autopsy (pathology) findings are available and if so, report the results. |
Suggested data quality indicators
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