Notes from the Field: Carbapenem-resistant Klebsiella pneumoniae with mcr-1 Gene Identified in a Hospitalized Patient — Wyoming, January 2019
Weekly / February 14, 2020 / 69(6);171–172
Heather Rhodes, MPH1,2; Cody Loveland, MPH2; Clayton Van Houten, MS2; Noah Hull, PhD2,3; Alexia Harrist, MD, PhD2 (View author affiliations)View suggested citation
Views equals page views plus PDF downloads
In mid-December 2018, an adult with a history of recurrent urinary tract infections was admitted to a Wyoming hospital with acute confusion. Because of a history of methicillin-resistant Staphylococcus aureus, the patient was placed on contact precautions in a private room. Admission urine culture and antimicrobial susceptibility testing identified carbapenem-resistant Klebsiella pneumoniae with extended-spectrum beta-lactamase production. Susceptibility to colistin, an antibiotic of last resort, was not tested. Carbapenem-resistant Enterobacteriaceae (CRE) infections are reportable to the Wyoming Department of Health (WDH), and the isolate was sent to the Wyoming Public Health Laboratory (WPHL), where ertapenem resistance was confirmed. Further testing identified resistance to 16 antibiotics* and susceptibility to amikacin, imipenem, meropenem, and tigecycline. Using the Carba NP assay (1), carbapenemase production was not found. WPHL sent the isolate to the Texas Antibiotic Resistance (AR) Laboratory Network regional laboratory for further characterization. Because of known sensitivity issues with the Carba NP assay (2), repeat testing used the modified carbapenem inactivation method. Texas AR Laboratory Network confirmed WPHL results. Colistin susceptibility testing by broth microdilution found that the minimum inhibitory concentration was >4 μg/mL, which was above the Clinical and Laboratory Standards Institute’s epidemiologic cutoff value for wild type Enterobacteriaceae (≤2 μg/mL) (3). The plasmid-mediated mcr-1 colistin resistance gene was detected using a CDC-developed multiplex real-time polymerase chain reaction assay (4). In early January 2019, Texas AR Laboratory Network alerted WDH that the isolate carried the mcr-1 gene.
WDH began an investigation using CDC guidance† to determine where the patient might have acquired the microorganism and to identify any spread to other hospitalized patients. WDH reviewed medical records and interviewed the patient and family members. The patient reported U.S. travel, but no international travel or livestock exposure. The patient had experienced repeated urinary tract infections with carbapenem-susceptible Escherichia coli and K. pneumoniae during the previous 2 years, which were treated with cephalosporin, fluoroquinolone, and nitrofuran antibiotics. The patient’s last hospitalization in Wyoming, for E. coli bacteremia, occurred 17 months earlier. In August 2018, the patient underwent a cystoscopy at a hospital-affiliated Colorado outpatient urology clinic. The Colorado Department of Public Health and Environment conducted a separate retrospective investigation into CRE reports from the clinic’s geographic region; no evidence of ongoing CRE transmission was identified. The patient recovered after receiving appropriate antibiotics and was discharged in January 2019.
WDH reviewed the Wyoming hospital’s infection control measures. Medical, nursing, and infection control staff members reported adherence to contact precautions throughout the patient’s stay. A point-prevalence survey was conducted to identify possible transmission. Six patients whose hospitalizations overlapped with the index patient’s by >1 day on the same hospital unit were identified. Rectal swabs were collected from four consenting patients and sent to CDC’s Antimicrobial Resistance and Characterization Laboratory to test for mcr-1–positive CRE colonization. All were negative.
The presence of mcr-1 in CRE could promote development of untreatable, panresistant infections.§ Multiple countries have reported the mcr-1 gene in Enterobacteriaceae species isolated from food, water, humans, and the environment (5), including two animal isolates and 55 human isolates in the United States.¶ Bacteria harboring mcr-1 have been acquired in community and health care settings (6). Although mcr-1 is less common in K. pneumoniae than other Enterobacteriaceae, presence of this transferable resistance gene in this species is of public health concern because it likely carries other antimicrobial mechanisms for resistance and is frequently associated with health care settings.**
First identified in the United States in Pennsylvania in 2016 and since then reported in 20 more states, this is the first mcr-1 isolate reported in Wyoming or surrounding states. The patient’s frequent intermittent antibiotic use could have increased the risk for contracting antibiotic-resistant bacteria, but the route of acquisition is unknown. Wyoming’s CRE surveillance protocols supported identification of mcr-1. In general, laboratory testing of colistin-resistant CRE for the presence of mcr genes should be considered.
Sarah Janelle; Kyle Schutz; Alicia Shugart; Maroya Walters; Stacey Bosch; CDC Antimicrobial Resistance and Characterization Laboratory.
Corresponding author: Heather Rhodes, email@example.com, 307-777-5532.
All authors have completed and submitted the International Committee of Medical Journal Editors form for disclosure of potential conflicts of interest. No potential conflicts of interest were disclosed.
* Resistant: trimethoprim/sulfamethoxazole, tobramycin, piperacillin/tazobactam, nitrofurantoin, levofloxacin, gentamicin, ertapenem, ciprofloxacin, ceftriaxone, ceftazidime, cefotaxime, cefepime, cefazolin, aztreonam, ampicillin/sulbactam, and ampicillin; no Clinical and Laboratory Standards Institute breakpoint: polymyxin B.
- Nordmann P, Poirel L, Dortet L. Rapid detection of carbapenemase-producing Enterobacteriaceae. Emerg Infect Dis 2012;18:1503–7. CrossRefexternal icon PubMedexternal icon
- Pierce VM, Simner PJ, Lonsway DR, et al. Modified carbapenem inactivation method for phenotypic detection of carbapenemase production among Enterobacteriaceae. J Clin Microbiol 2017;55:2321–33. CrossRefexternal icon PubMedexternal icon
- Clinical and Laboratory Standards Institute (CLSI). Performance standards for antimicrobial susceptibility testing. 27th ed. CLSI supplement M100. Wayne, PA: CLSI; 2017.
- Daniels JB, Campbell D, Boyd S, et al. Development and validation of a clinical laboratory improvement amendments-compliant multiplex real-time PCR assay for detection of mcr genes. Microb Drug Resist 2019;25:991–6. CrossRefexternal icon PubMedexternal icon
- Nordmann P, Poirel L. Plasmid-mediated colistin resistance: an additional antibiotic resistance menace. Clin Microbiol Infect 2016;22:398–400. CrossRefexternal icon PubMedexternal icon
- Wang R, van Dorp L, Shaw LP, et al. The global distribution and spread of the mobilized colistin resistance gene mcr-1. Nat Commun 2018;9:1179. CrossRefexternal icon PubMedexternal icon
Suggested citation for this article: Rhodes H, Loveland C, Van Houten C, Hull N, Harrist A. Notes from the Field: Carbapenem-resistant Klebsiella pneumoniae with mcr-1 Gene Identified in a Hospitalized Patient — Wyoming, January 2019. MMWR Morb Mortal Wkly Rep 2020;69:171–172. DOI: http://dx.doi.org/10.15585/mmwr.mm6906a4external icon.
MMWR and Morbidity and Mortality Weekly Report are service marks of the U.S. Department of Health and Human Services.
Use of trade names and commercial sources is for identification only and does not imply endorsement by the U.S. Department of Health and Human Services.
References to non-CDC sites on the Internet are provided as a service to MMWR readers and do not constitute or imply endorsement of these organizations or their programs by CDC or the U.S. Department of Health and Human Services. CDC is not responsible for the content of pages found at these sites. URL addresses listed in MMWR were current as of the date of publication.
All HTML versions of MMWR articles are generated from final proofs through an automated process. This conversion might result in character translation or format errors in the HTML version. Users are referred to the electronic PDF version (https://www.cdc.gov/mmwr) and/or the original MMWR paper copy for printable versions of official text, figures, and tables.
Questions or messages regarding errors in formatting should be addressed to firstname.lastname@example.org.