COVIDView: A Weekly Surveillance Summary of U.S. COVID-19 Activity

COVIDView Summary ending on June 6, 2020

COVIDView Summary ending on June 6, 2020
Updated June 12, 2020

Download Weekly Summary pdf icon[47 Pages, 2 MB]

Key Updates for Week 23, ending June 6, 2020

Nationally, levels of influenza-like illness (ILI) and COVID-19-like illness (CLI) continue to decline or remain stable at low levels. The percentage of specimens testing positive for SARS-CoV-2, the virus that causes COVID-19, increased slightly from last week. Mortality attributed to COVID-19 also decreased compared to last week but remains elevated above baseline and may increase as additional death certificates are processed.

Virus

Public Health, Commercial and Clinical Laboratories

The overall percentage of respiratory specimens testing positive for SARS-CoV-2 increased slightly from week 22 (6.0%) to week 23 (6.3%) nationally driven by increases in four regions. National percentages by type of laboratory:

  • Public health laboratories – decreased from 5.8% during week 22 to 5.0% during week 23;
  • Clinical laboratories – decreased from 5.5% during week 22 to 5.3% during week 23;
  • Commercial laboratories – increased from 6.1% during week 22 to 6.5% during week 23.

Outpatient and Emergency Department Visits

Outpatient Influenza-Like Illness Network (ILINet) and National Syndromic Surveillance Program (NSSP)

Two surveillance indicators are being used to track outpatient or emergency department (ED) visits for illness with symptoms compatible with COVID-19.

  • Nationally, the percentages of visits for ILI and CLI decreased or remained stable at low levels, compared to last week. Levels of ILI are below baseline nationally for the eighth week and in all 10 surveillance regions for the past six to nine weeks.

Recent changes in health care seeking behavior, including increasing use of telemedicine, recommendations to limit emergency department (ED) visits to severe illnesses, and increased practice of social distancing, are likely affecting data reported from both networks, making it difficult to draw conclusions at this time. Tracking these systems moving forward will give additional insight into illness related to COVID-19.

Severe Disease

Hospitalizations

Cumulative COVID-19-associated hospitalization rates since March 1, 2020, are updated weekly. The overall cumulative COVID-19 hospitalization rate is 89.3 per 100,000, with the highest rates in people aged 65 years and older (273.8 per 100,000) and 50-64 years (136.1 per 100,000).

Mortality

Based on death certificate data, the percentage of deaths attributed to pneumonia, influenza or COVID-19 (PIC) decreased from 12.4% during week 22 to 7.3% during week 23 but remained above baseline. This is the seventh week of a declining percentage of deaths due to PIC, but this percentage may change as more death certificates are processed, particularly for recent weeks.

All data are preliminary and may change as more reports are received.

A description of the surveillance systems summarized in COVIDView, including methodology and detailed descriptions of each data component, is available on the surveillance methods page.

Key Points

  • Nationally, using combined data from the three laboratory types, the percentages of laboratory specimens testing positive for SARS-CoV-2 with a molecular assay increased slightly compared to last week.
    • The national increase was driven by increases in four HHS surveillance regions: Region 2 (North East), Region 4 (South East), Region 6 (South Central), and Region 10 (Pacific Northwest).
    • While the number of specimens from children <18 years of age tested is low (<5% of all specimens tested in public health and commercial laboratories), the percentage testing positive for SARS-CoV-2 in this age group is higher than it is  in the adult age groups.
  • While the number of COVID-19 cases reported to CDC is cumulative and continues to increase, nationally, the proportion of visits to outpatient providers and emergency departments (EDs) for illnesses with symptoms consistent with COVID-19 continued to decline or remain stable at low levels. Outpatient ILI visits are below baseline nationally and in all regions of the country.
    • The low levels of people presenting for care with ILI and CLI may reflect low levels of  COVID-19 and other respiratory illness, which could be in part a result of widespread adoption of social distancing, in addition to changes in healthcare seeking behavior.
    • There has been very little influenza virus activity in recent weeks.
  • The overall cumulative COVID-19 associated hospitalization rate is 89.3 per 100,000, with the highest rates in people 65 years of age and older (273.8 per 100,000) followed by people 50-64 years (136.1 per 100,000). Hospitalization rates are cumulative and will increase as the COVID-19 pandemic continues.
    • Non-Hispanic American Indian or Alaska Native persons have a rate approximately 5 times that of non-Hispanic White persons, non-Hispanic Black persons have a rate approximately 4.5 times that of non-Hispanic White persons, and Hispanic or Latino persons have a rate approximately 4 times that of non-Hispanic White persons.
    • Cumulative hospitalization rates for COVID-19 in adults (18-64 years) at this time are higher than cumulative end-of-season hospitalization rates for influenza over each of the past 5 influenza seasons.
    • For people 65 years and older, current cumulative COVID-19 hospitalization rates are within ranges of cumulative influenza hospitalization rates observed at comparable time points* during recent influenza seasons.
    • For children (0-17 years), cumulative COVID-19 hospitalization rates are much lower than cumulative influenza hospitalization rates at comparable time points* during recent influenza seasons.
  • Based on death certificate data, the percentage of deaths attributed to pneumonia, influenza or COVID-19 (PIC) decreased from 12.4% during week 22 to 7.3% during week 23. This is the seventh week during which a declining percentage of deaths due to PIC has been recorded; however, the percentage remains above the epidemic threshold. The percentage may change as additional death certificates for deaths during recent weeks are processed.

*Number of weeks since 10% of specimens tested positive for SARS-CoV-2 and influenza, respectively.

U.S. Virologic Surveillance

The number of specimens tested for SARS-CoV-2 using a molecular assay and reported to CDC by public health laboratories and a subset of clinical and commercial laboratories in the United States are summarized below. All laboratories are performing primary diagnostic functions; therefore, the percentage of specimens testing positive across laboratory types can be used to monitor overall trends in COVID-19 activity. As the outbreak progresses, it is possible that different types of laboratories will take on different roles, and the data interpretation may need to change.

Summary of Laboratory Testing Results Reported to CDC
Summary of Laboratory Testing Results Reported to CDC* Week 23
(May 31 – June 6, 2020)
Cumulative since March 1, 2020
No. of specimens tested 1,587,072 12,604,300
     Public Health Laboratories 189,815 1,650,462
          Clinical Laboratories 105,670 1,089,500
          Commercial Laboratories 1,291,587 9,864,338
No. of positive specimens (%) 99,357 (6.3%) 1,379,860 (10.9%)
     Public Health Laboratories 9,543 (5.0%) 174,716 (10.6%)
          Clinical Laboratories 5,593 (5.3%) 83,910 (7.7%)
          Commercial Laboratories 84,221 (6.5%) 1,121,234 (11.4%)

* Commercial and clinical laboratory data represents select laboratories and does not capture all tests performed in the United States.

Public Health Laboratories

View Data Table

Clinical Laboratories

View Data Table

Commercial Laboratories

* Commercial laboratories began testing for SARS-CoV-2 in early March, but the number and geographic distribution of reporting commercial laboratories became stable enough to calculate a weekly percentage of specimens testing positive as of March 29, 2020.

View Data Table

Additional virologic surveillance information: Surveillance Methods

Outpatient/Emergency Department Illness

Two syndromic surveillance systems are being used to monitor trends in outpatient and emergency department visits that may be associated with COVID-19 illness. Each system monitors a slightly different syndrome, and together these systems provide a more comprehensive picture of mild to moderate COVID-19 illness than either would individually. Both systems are currently being affected by recent changes in healthcare seeking behavior, including increased use of telemedicine, compliance with recommendations to limit emergency department (ED) visits to severe illnesses, and increased practice of social distancing. These changes affect the numbers of people seeking care in the outpatient and ED settings and their reasons for doing so.

ILINet

The U.S. Outpatient Influenza-like Illness Surveillance Network (ILINet) provides data on visits for influenza-like illness (ILI) (fever [≥100F] and cough and/or sore throat) to approximately 2,600 primary care providers, emergency departments and urgent care centers in all 50 states, Puerto Rico, the District of Columbia and the U.S. Virgin Islands. Mild COVID-19 illness presents with symptoms similar to ILI, so ILINet is being used to track trends of mild to moderate COVID-19 illness and allows for comparison with prior influenza seasons.

Nationwide during week 23, 0.7% of patient visits reported through ILINet were due to ILI. This percentage is well below the national baseline of 2.4% and represents the eleventh week of decline after three weeks of increase beginning in early March. The percentage of visits for ILI in week 23 remains low among all age groups. Nationally, laboratory-confirmed influenza activity as reported by clinical laboratories is at levels usually seen during summer months which, along with changes in healthcare seeking behavior and the impact of social distancing, is likely contributing to the low level of ILI activity.

* Age-group specific percentages should not be compared to the national baseline.

On a regional levelexternal icon, the percentage of outpatient visits for ILI ranged from 0.4% to 1.1% during week 23. All ten regions are at low levels and below their region-specific baselines.

Note: In response to the COVID-19 pandemic, new sites will be enrolled in ILINet throughout the summer. This will result in an increase in patient visits and the percentage of visits for ILI may change in comparison to previous weeks. During week 21, new sites were added in Regions 1, 4, and 6. While these regions remain below baseline levels for ILI, these system changes should be kept in mind when drawing conclusions from these data. Any changes in ILI due to changes in respiratory virus circulation will be highlighted in this report.

Overall Percentage of Visits for ILI | Age Group ILI Data

ILI Activity Levels

Data collected in ILINet are used to produce a measure of ILI activity for all 50 states, Puerto Rico, the District of Columbia and New York City. The mean reported percentage of visits due to ILI for the current week is compared to the mean reported during non-influenza weeks, and the activity levels correspond to the number of standard deviations below, at or above the mean.

The number of jurisdictions at each activity level during week 23 and the change compared to the previous week are summarized in the table below and shown in the following maps. The decreasing percentage of visits for ILI described above are reflected in this week’s ILI activity levels.

ILI Activity Levels
Activity Level Number of Jurisdictions
Week 23
(Week ending June 6, 2020)
Compared to Previous Week
Very High 0 No change
High 0 No change
Moderate 0 -1
Low 1 No change
Minimal 52 +1
Insufficient Data 1 No change

*Data collected in ILINet may disproportionally represent certain populations within a state and may not accurately depict the full picture of influenza activity for the whole state. Differences in the data presented here by CDC and independently by some state health departments likely represent differing levels of data completeness with data presented by the state likely being the more complete.

National Syndromic Surveillance Program (NSSP): Emergency Department (ED) Visits

NSSP is a collaboration among CDC, federal partners, local and state health departments and academic and private sector partners to collect, analyze and share electronic patient encounter data received from multiple healthcare settings. To track trends of potential COVID-19 visits, visits for COVID-19-like illness (CLI) (fever and cough or shortness of breath or difficulty breathing or presence of a coronavirus diagnosis code) and ILI to a subset of emergency departments in 47 states are being monitored.

Nationwide during week 23, 1.6% of emergency department visits captured in NSSP were due to CLI and 0.6% were due to ILI. This is the eleventh week of declining or stable percentage of visits for ILI and the ninth week of declining percentage of visits for CLI. Compared to week 22, all 10 HHS regionsexternal icon had declining or stable percentages of visits for CLI during week 23; all 10 regions also had declining or stable percentages of visits for ILI.

Additional information about medically attended outpatient and emergency department visits for ILI and CLI: Surveillance Methods

Hospitalizations

The COVID-19-Associated Hospitalization Surveillance Network (COVID-NET) conducts population-based surveillance for laboratory-confirmed COVID-19-associated hospitalizations in select counties participating in the Emerging Infections Program (EIP) and the Influenza Hospitalization Surveillance Project (IHSP).

A total of 28,987 laboratory-confirmed COVID-19-associated hospitalizations were reported by sites between March 1, 2020, and June 6, 2020. The overall cumulative hospitalization rate was 89.3 per 100,000 population. Among the 0-4 years, 5-17 years, 18-49 years, 50-64 years, and ≥ 65 years age groups, the highest rate of hospitalization is among adults aged 65 years (273.8 per 100,000), followed by adults aged 50-64 years (136.1 per 100,000) and adults aged 18-49 years (52.4 per 100,000).

Hospitalization Rates
Age Group Cumulative Rate per 100,000 Population
Overall

89.3

     0-4 years

5.6

     5-17 years

3.1

     18-49 years

52.4

  18-29 years

27.3

  30-39 years

52.5

  40-49 years

84.6

    50-64 years

136.1

    65+ years

273.8

  65-74 years

198.7

  75-84 years

329.3

  85+ years

513.2

Among the 28,987 laboratory-confirmed COVID-19-associated hospitalized cases, 24,936 (86.0%) had information on race and ethnicity, while collection of race and ethnicity was still pending for 4,051 (14.0%) cases. Of the 24,936 cases with race and ethnicity data, 34.2% were non-Hispanic White, 32.9% were non-Hispanic Black, 20.2% were Hispanic or Latino, 4.6% were non-Hispanic Asian or Pacific Islander, and 1.5% were non-Hispanic American Indian or Alaska Native persons. Persons of multiple races represented 0.2% of cases, and 6.4% of cases had unknown race and ethnicity. In comparison, the COVID-NET catchment area population includes 58.8% non-Hispanic White, 17.7% non-Hispanic Black, 14.0% Hispanic or Latino, 8.8% non-Hispanic Asian or Pacific Islander, and 0.7% non-Hispanic American Indian or Alaska Native residents. Additional data on race and ethnicity are available.

COVID-19-associated hospitalization rates by race/ethnicity are calculated using hospitalized COVID-NET cases with known race and ethnicity for the numerator and NCHS bridged-race population estimates for the denominator. Rates are adjusted to account for differences in age distributions within race/ethnicity strata in the COVID-NET catchment area; the age strata used for the adjustment include 0-17, 18-49, 50-64, 65-74, 75-84, and ≥ 85 years. Age-adjusted hospitalization rates are highest among non-Hispanic American Indian or Alaska Native and non-Hispanic Black persons, followed by Hispanic or Latino persons. Non-Hispanic American Indian or Alaska Native persons have a rate approximately 5 times that of non-Hispanic White persons, non-Hispanic Black persons have a rate approximately 4.5 times that of non-Hispanic White persons, while Hispanic or Latino persons have a rate approximately 4 times that of non-Hispanic White persons.

Among 6,693 hospitalized adults with information on underlying medical conditions, 91.5% had at least one reported underlying medical condition. The most commonly reported were hypertension, obesity, chronic metabolic disease, and cardiovascular disease. Among 128 hospitalized children with information on underlying conditions, 53.1% had at least one reported underlying medical condition. The most commonly reported condition was obesity.

Additional data on demographics, signs and symptoms at admission, underlying conditions, interventions, outcomes, and discharge diagnoses, stratified by age, sex, and race and ethnicity, are available.

Additional hospitalization surveillance information: Surveillance Methods  | Additional rate data  |  Additional demographic and clinical data

Mortality Surveillance

The National Center for Health Statistics (NCHS) collects death certificate data from vital statistics offices for all deaths occurring in the United States. Based on death certificate data available on June 11, 2020, 7.3% of all deaths occurring during the week ending June 6, 2020 (week 23) were due to pneumonia, influenza or COVID-19 (PIC). This is the seventh week of a declining percentage of deaths due to PIC; however, the percentage remains above the epidemic threshold of 6.2% for week 23. Data for recent weeks are incomplete, and the PIC percentage may increase as more death certificates representing deaths during these weeks are processed.

Weekly mortality surveillance data include a combination of machine coded and manually coded causes of death collected from death certificates. Percentages of deaths due to PIC are higher among manually coded records than more rapidly available machine coded records. Due to the additional time needed for manual coding, the initially reported PIC percentages may be lower than percentages calculated from final data.

*Data during recent weeks are incomplete because of the lag in time between when the death occurred and when the death certificate is completed, submitted to NCHS and processed for reporting purposes.

View Data Table

Additional NCHS mortality surveillance information: Surveillance Methods  | Provisional Death Counts for COVID-19