What to know
- Timely, comprehensive laboratory testing and results reporting is critical to monkeypox disease management.
- These data help public health officials understand more about the spread of MPXV.
- Testing and results data can help predict increases in testing demand and any potential supply chain issues for testing materials.
Reporting process
Any laboratory that performs diagnostic testing for monkeypox should report test results to state, tribal, local, or territorial (STLT) health departments. This includes real-time polymerase chain reaction (PCR) testing for orthopoxvirus, non-variola orthopoxvirus (NVO), or monkeypox virus (MPXV).
- Report all qualitative results unless otherwise specified by the appropriate health department.
- Report positive results via 1CDP within 24 hours of testing, or immediately by telephone to the appropriate health department per the regulations in the applicable jurisdiction.
- The applicable jurisdiction is typically the health department in the patient's state or territory of residence.
What to report
- Laboratories should make every reasonable effort to provide the following data elements when reporting results to state and jurisdictional health departments.
- Do not reject specimens if data elements are missing but there is enough other information to perform testing.
- Test order: use appropriate Logical Observation Identifiers, Names and Codes (LOINC) terms (see table below)
- Test order date (date format)
- Test result
- Performed Test: use appropriate LOINC terms (see table below)
- Test result value: For quantitative results include units of measure, if applicable coded in Unified Codes for Units of Measure (UCUM). For qualitative results use appropriate Systematized Nomenclature of Medicine-Clinical Terms (SNOMED-CT) code (see table below).
- Test result date (date format)
- Patient ID** (unique identifier assigned to an individual)
- Patient name (Last name, First name, Middle Initial)
- Patient street address
- Patient phone number with area code
- Patient date of birth
- Patient age
- Patient race
- Patient ethnicity
- Patient sex
- Patient residence zip code
- Ordering provider name
- Ordering provider zip code
- Ordering provider address
- Ordering provider phone number
- Performing facility name and Clinical Laboratory Improvement Amendments, or CLIA number
- Performing facility zip code
- Accession # / Specimen ID** (unique identifier assigned to a specimen)
- Specimen Source
- Specimen Type: use appropriate SNOMED-CT codes from the specimen hierarchy (see table below for some examples) or HL70487 codes
- Source site: when the specimen type is a crust or a swab, it may be necessary to indicate where on the body this was taken from. Use appropriate SNOMED-CT codes from the anatomic body site hierarchy (see table below for examples); in addition, more detailed topography like laterality may be needed. Include this in the code for the source site, or send in as an additional element using SNOMED-CT codes from the qualifier hierarchy
- Specimen collection date (date format)
**Patient ID and Accession #/Specimen ID are necessary to identify multiple specimens from an individual once the data is deidentified.
To protect patient privacy, any data CDC receives from state and jurisdictional health departments will be de-identified and will not include patient-level information.
Information to inform surveillance and contact tracing efforts
- Laboratories are strongly encouraged to obtain the following information from electronic health records, ordering physicians, or both for reporting reasons.
- Educate physicians (and those who place test orders on their behalf) about data needs at the time the test order is placed.
- To collect this information efficiently, you may need to update electronic laboratory order interfaces to ensure necessary information from the electronic health record, the ordering physician, or both is fully populated.
- Patient information: name, date of birth, street address, phone number
- Demographic data (i.e., sex) to support epidemiologic priorities
- Specimen information, including the type, the source site (with topography, e.g., right, left, distal) and collection method
- Clinical history, if known, including symptoms, onset dates, travel history, epidemiological links to other cases, treatment with any medical countermeasures, and co-morbidities (International Classification of Diseases (ICD) diagnoses) that accompany the lab order
How to report
Laboratories should follow these best practices when reporting test results:
- Submit laboratory diagnostic test results directly to STLT health departments according to policy or state or local law.
- Send reports via existing electronic laboratory reporting (ELR) channels to ensure rapid initiation of case investigations.
- Share results concurrently with the ordering provider.
- Send compliant HL7 messages, if possible, and prioritize the data elements described in the "How to Use Standard Terminology" section (see below).
- Engage with your STLT health department to ensure compliance with their specific implementation guides if available in your jurisdiction.
- Coordinate with your STLT health department to review data feeds before you submit results.
Standard terminology
Laboratories should use standardized LOINC and SNOMED-CT codes. This improves the accuracy of reporting results for orthopoxvirus, NVO, and MPXV and helps ensure that test types are uniformly represented across the United States.
LOINC codes represent the "question" a test asks of a specimen (for example, does this specimen have monkeypox?), and SNOMED-CT codes represent the diagnostic "answer" (for example, what was detected?). Find more background on these terminology standards here:
Whenever possible, laboratories should use standard codes that already exist.
Orthopoxvirus
Orthopoxvirus Deoxyribonucleic acid, or DNA [Presence] in Specimen by Nucleic Acid Amplification, or NAA with probe detection
41853-3
Non-variola Orthopoxvirus
Orthopoxvirus non-variola DNA [Presence] in Specimen by NAA with probe detection
100434-0
Monkeypox Virus
Monkeypox virus DNA [Presence] in Specimen by NAA with probe detection
100383-9
Monkeypox Virus Clade II
Monkeypox virus clade II DNA [Presence] in Specimen by NAA with probe detection*100888-7
100888-7
Monkeypox Virus Clade I
Monkeypox virus clade I DNA [Presence] in Specimen by NAA with probe detection*
100889-5
Parapoxvirus
Parapoxvirus DNA [Presence] in Specimen by NAA with probe detection
100885-3
Orf Virus
Orf virus DNA [Presence] in Specimen by NAA with probe detection
100886-1
Pseudocowpox Virus
Pseudocowpox virus DNA [Presence] in Specimen by NAA with probe detection
100887-9
Orthopoxvirus IgG
Orthopoxvirus IgG Ab [Presence] in Serum or Plasma by Immunoassay
100891-1
Orthopoxvirus IgM
Orthopoxvirus IgM Ab [Presence] in Serum or Plasma by Immunoassay
100892-9
Detected*
260373001
Inconclusive
419984006
Equivocal
42425007
Not detected*
260415000
Test not done
373121007
* These are the preferred terms to use, when reporting results from PCR testing; other presence/absence terms like positive/negative are possible and should be mapped to these terms.
Scab specimen (crust)
435541000124108
Swab from lesion of skin
472862007
Swab from lesion
16210971000119108
Oral swab
418932006
Rectal swab
258528007
Oral cavity
74262004
Rectum
34402009
Genital structure
71934003
Upper Arm (between shoulder and elbow)
40983000
Shoulder
16982005
Elbow
127949000
Hand
85562004
Thigh
68367000
Left hand
85151006
Right thigh
11207009
Right
24028007
Left
7771000
Proximal
40415009
Distal
46053002
*** These could also be included in the Source Site values above; for example: Left hand (85151006) or Right thigh (11207009).
Assistance with electronic reporting
CDC can provide technical assistance to laboratories that are not currently reporting electronically to their STLT health department and would like to establish electronic reporting.
Contact the CDC Electronic Data Exchange inbox at edx@cdc.gov and use "Monkeypox Technical Assistance Request" as the subject line.