Questions and Answers about Lab Testing
Questions in This Section
A: CDC recommends that a buccal or oral swab specimen and a blood specimen be collected from all patients with clinical features compatible with mumps. See Specimen Collection, Storage, and Shipment for detailed instructions regarding recommended samples for mumps testing.
A: The acute-phase serum and clinical samples for detection of virus should be collected as soon as possible upon suspicion of mumps disease. The early collection of buccal swab specimens provides the best means of laboratory confirmation, particularly among suspected mumps patients with a history of vaccination (Rota et al, 2013). If the acute-phase serum sample collected ≤3 days after parotitis onset is negative, and the case has a negative (or not done) result for RT-PCR, a second serum sample collected 5–10 days after symptom onset is recommended because, in some cases, the IgM response is not detectable until 5 days after symptom onset. In an outbreak setting (see Figure below), the proportion of samples with positive results by RT-PCR (N target gene) decreased as the interval between onset and specimen collection increased (Rota et al., 2013). The trend was reversed for IgM detection with increasing time to sample collection the number of seropositive samples increased.
Percentage of Mumps Specimens Determined Positive by CDC IgM Capture EIA or rRT-PCR (N target gene) as a Function of Time Post Parotitis Onset*
A: Standard serologic assays that detect mumps IgM are commercially available in both EIA and IFA formats. Viral detection methods include standard methods of culturing virus in appropriate cell lines and techniques, such as real time RT-PCR to detect mumps viral RNA. RT-PCR is available at many sate public health laboratories and though the APHL/CDC Vaccine Preventable Disease Reference Centers (VPD-RC [2 pages]).
Questions in This Section
- Why should I ask for buccal or oral swab specimens in addition to the serum sample?
- What does a mumps-negative RT-PCR result mean?
- What does a mumps-positive RT-PCR result mean?
- Why attempt to isolate mumps virus in cell culture?
- What is a mumps genotype?
- What is the gold standard for laboratory confirmation of mumps?
- If a clinical sample is determined to be positive by RT-PCR or by viral isolation at the state laboratory, is it necessary to send a sample to CDC for sequence analysis?
- Where can I find RT-PCR and real-time RT-PCR protocols for mumps?
- Where do I obtain material for RT-PCR and virus isolation controls?
A: Buccal and oral swab samples enhance the ability to laboratory-confirm a mumps infection and can provide additional information (sequence analysis to obtain the mumps genotype) to aid epidemiologic investigations. Because serologic tests cannot differentiate between an exposure to vaccine and an exposure to wild-type mumps virus, it is necessary to obtain other clinical samples to determine the genotype (wild-type vs. vaccine).
A: Failure to detect mumps virus RNA by RT-PCR in samples from a person with clinically compatible mumps symptoms does not rule out mumps as a diagnosis. Successful detection of mumps virus depends primarily on the timing of collection and quality of the clinical sample. Vaccinated individuals may shed virus for a shorter period and might shed smaller amounts of virus, thus degradation of the sample has greater consequences for successful detection of virus. In outbreaks among two-dose vaccine recipients, mumps virus RNA was detected in samples from 30%–71% of case-patients if the samples were collected within 3 days following onset of parotitis. IgM was detected in 13 to 50% of these cases (Bitsko et al, 2008, Rota et al. 2009 Rota et al.2013).
A: A positive RT-PCR signal indicates the presence of mumps virus RNA in the patient sample. The positive result should be used only to support a clinical diagnosis of mumps. A positive RT-PCR result provides laboratory confirmation of mumps infection in persons with symptoms consistent with mumps who have not been vaccinated within the preceding 45 days.
A: Virus isolation is considered among the best methods for confirming mumps infection. Virus can be detected when IgM antibodies or a rise in IgG titer are not detected. Often it is necessary to grow the virus in culture to have adequate material for viral sequencing. Sequence analysis allows the determination of the mumps genotype (there are currently 12 recognized genotypes). The sequence information can help to identify the source of the virus and can provide confirmation of suspected epidemiologic links. In addition, virus isolation is less likely than PCR assays to give false-positive results due to contamination.
A: Mumps strains are assigned to 1 of 12 genotypes on the basis of the sequence of the gene coding for the SH (short hydrophobic) protein (Jin, L., et al., Genomic diversity of mumps virus and global distribution of the 12 genotypes. Rev Med Virol, 2015. 25(2): p. 85-101). In some cases, a genotype has been associated with endemic circulation of mumps virus in a country or region; however, routine virologic surveillance for mumps is limited to only a few countries. The genetic information from circulating mumps viruses is used to track the transmission pathways of the virus and can be used to suggest epidemiologic links, or lack thereof, between cases and outbreaks. The Jeryl-Lynn vaccine strain is a member of genotype A, so identification of genotype A suggests an association with recent vaccination.
A: Virus culture is the gold standard for mumps confirmation. However, sample quality must be maintained to ensure viability of the virus. Laboratories are strongly encouraged to perform cell culture isolation of mumps from buccal or oral swab specimens. Primary monkey kidney cells and Vero cells are frequently used to isolate virus. Confirmation of successful isolation of mumps can be performed using immunofluorescent antibody staining or standard RT-PCR. Unfortunately, virus isolation can require several days to several weeks to complete, while detection IgM by EIA or viral RNA by RT-PCR can usually be performed in less than one day.
Q: If a clinical sample is determined to be positive by RT-PCR or by viral isolation at the state laboratory, is it necessary to send a sample to CDC for sequence analysis?
A: Laboratories are encouraged to send patient samples from positive sporadic cases of mumps as well as representative samples from an outbreak. The sequence of the mumps short hydrophobic (SH) gene is used to assign mumps viruses to one of 12 recognized genotypes. The sequence information will help to identify the source of the virus and can provide confirmation of suspected epidemiologic links. Samples for genotyping can be sent to the CDC or the VPD-RCs.
A: The following protocols are available online:
A: CDC can provide a sample of RNA that has been purified from cells infected with mumps virus. This material is ready to use in RT-PCR reactions. If laboratories would like to produce their own RNA samples or require a positive control for virus isolation, CDC can provide a sample of wild-type mumps virus. Public health laboratories or laboratories affiliated with state public health laboratories may send request for mumps RNA or virus to email@example.com. A proficiency test for mumps RT-PCR can be obtained from the Wisconsin State Laboratory of Hygiene.
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- Jin, L., et al., Genomic diversity of mumps virus and global distribution of the 12 genotypes. Rev Med Virol, 2015. 25(2): p. 85-101.
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- Rota JS, Rose JB, Doll MK, McNall RJ, McGrew M, Williams N, Lopareva EN, Barskey AE, Punsalang Jr A, Rota PA, Oleszko WR, Hickman CJ, Zimmerman DM, Bellini WJ. Comparison of the sensitivity of laboratory diagnostic methods from a well-characterized outbreak of mumps in New York City in 2009. Clin Vaccine Immunol. 2013;20:391-6.
- Rota JS, Turner JC, Yost-Daljev MK, Freeman M, Toney DM, Meisel E, Williams N, Sowers SB, Lowe L, Rota PA, Nicolai LA, Peake L, Bellini WJ. Investigation of a mumps outbreak among university students with two measles-mumps-rubella (MMR) vaccinations, Virginia, September–December 2006. J Med Virol 2009;81:1819–25.
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- Page last reviewed: November 17, 2016
- Page last updated: November 17, 2016
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