Candida auris in a U.S. Patient with Carbapenemase-Producing Organisms and Recent Hospitalization in Kenya

Richard B. Brooks, MD1,2; Maroya Walters, PhD1; Kaitlin Forsberg, MPH3,4; Elisabeth Vaeth, MPH2; Kate Woodworth, MD1; Snigdha Vallabhaneni, MD3 (View author affiliations)

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What is already known about this topic?

Candida auris is an emerging drug-resistant yeast of high public health concern.

What is added by this report?

A Maryland resident with hospitalization in Kenya and carbapenemase-producing organism (CPO) colonization/infection was screened and found to be colonized with C. auris, demonstrating that CPO investigations can facilitate early identification of C. auris.

What are the implications for public health practice?

Health care exposure outside the United States and CPO colonization/infection are C. auris risk factors. CPO case investigations can provide opportunities to identify patients with overnight hospitalization outside the United States during the previous year, enabling early detection of C. auris if CDC recommendations to screen such patients for C. auris colonization are followed.

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The figure urges providers to consider screening patients who were recently hospitalized abroad for CRE %26 C. auris.


Candida auris is an emerging drug-resistant yeast that causes outbreaks in health care facilities; cases have been reported from approximately 30 countries. U.S. cases of C. auris are likely the result of importation from abroad followed by extensive local transmission in health care settings (1). Early detection of Candida auris is key to preventing its spread. C. auris frequently co-occurs with carbapenemase-producing organisms (CPOs), like carbapenem-resistant Enterobacteriaceae (CRE), organisms for which testing and public health response capacity substantially increased beginning in 2017. In September 2018, the Maryland Department of Health (MDH) was notified of a hospitalized resident with CPO infection and colonization and recent hospitalization in Kenya. In light of this history, the patient was screened for C. auris and found to be colonized. Public health responses to CPOs can aid in the early identification of C. auris. As part of CPO investigations, health departments should assess whether the patient has risk factors for C. auris and ensure that patients at risk are tested promptly.

First identified in Japan in 2009, C. auris is an emerging drug-resistant yeast that has now been reported in approximately 30 countries (2). C. auris has been associated with outbreaks in health care facilities, where its spread is facilitated by challenges with identification, persistent contamination of the health care environment, and limited effectiveness of some standard hospital disinfectants. In the United States, outbreaks have most frequently occurred in high-acuity postacute care facilities, including nursing homes that care for mechanically ventilated patients. Co-infection or co-colonization with C. auris and other emerging multidrug-resistant organisms, including CPOs, has been observed regularly.

In September 2018, the MDH was notified about a patient who had recently been medically evacuated from Kenya to an acute care hospital in Maryland. The patient was a U.S. resident who did not work in health care and who had a cerebral hemorrhage while visiting Kenya. During the subsequent month-long hospitalization in Kenya, the patient underwent several operations and other procedures, including arterial clipping and placement of a tracheostomy and feeding tube. Hospital treatment was complicated by sepsis, pneumonia, and a urinary tract infection, requiring treatment with broad-spectrum antibiotics and at least one course of antifungal medications.

In light of the patient’s history of receiving health care abroad, the Maryland hospital placed the patient on contact precautions in a private room immediately upon admission (3). Specimens collected at admission to evaluate ongoing fevers grew several highly drug-resistant organisms, including oxacillinase-48-like-producing carbapenem-resistant Klebsiella pneumoniae in urine and New Delhi metallo-beta-lactamase-producing carbapenem-resistant Pseudomonas aeruginosa in sputum.

At the time of the investigation, C. auris had been reported from one major hospital in Kenya, although not from the facility where the Maryland patient had been hospitalized (4). MDH had previously identified C. auris colonization in a patient infected with multiple CPOs and who had had a recent prolonged hospitalization in India. Based on the current patient’s prolonged hospitalization in a country with known C. auris cases, the patient’s colonization and infection with CPOs, and MDH’s previous experience, MDH, in consultation with CDC, recommended that the hospital evaluate the patient for C. auris colonization. On hospital day 12, a single skin swab of the patient’s bilateral axilla and groin areas (one swab for all four areas) was obtained for fungal culture; resulting growth was identified as C. auris by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, indicating colonization in the absence of clinical signs and symptoms. Consistent with C. auris detection representing colonization rather than infection, the patient did not receive antifungal therapy while hospitalized in the United States and was ultimately discharged to a rehabilitation facility. Because of the potential for C. auris to be transmitted in health care settings (5), 21 patients located on the same hospital unit as the index patient were evaluated for C. auris colonization. All screening swabs were negative for C. auris.


C. auris colonization was identified in a hospitalized patient with a recent history of hospitalization in Kenya and CPO infection and colonization. Transmission of C. auris and CPOs to other patients was likely prevented because of the hospital’s rapid recognition of the patient’s high risk for multidrug-resistant organism colonization and immediate use of appropriate contact precautions upon admission. In facilities where patients with C. auris have not been immediately identified, and specific infection control measures were not implemented, transmission to other patients has occurred: in one long-term care facility ventilator unit, nearly half of patients became colonized with C. auris within months of the index patient’s admission to the facility (6). This case highlights the importance of a high level of suspicion for C. auris in persons admitted to U.S. health care facilities with a history of health care abroad, even if C. auris is not known to be widespread in that location. Early identification of C. auris is critical to preventing further transmission.

To date, 11 other patients with C. auris infection or colonization have been identified in the United States who had a recent history of hospitalization abroad, including in India, Pakistan, South Africa, the United Arab Emirates, and Venezuela. At least six of the 11 patients were also colonized with CPOs; co-colonization might have been higher because not all patients were assessed for CPO colonization. Whole genome sequencing demonstrated that the C. auris isolates from these 12 patients, including the patient described in this report, were in the same clades as isolates from the countries where the patients received health care (1).

CDC recommends screening for C. auris colonization for patients who have had an overnight stay in a health care facility outside the United States in the preceding 12 months, especially if care occurred in a country with documented C. auris infections (7). This is in addition to the 2013 CDC recommendation that facilities place patients who have had overnight stays in health care facilities outside the United States within the past 6 months on contact precautions and perform screening for CPOs like CRE (8). Health care facilities should develop strategies to consistently and reliably obtain patients’ travel histories for medical care received outside of the United States in order to identify patients to be screened, and patients should inform their health care providers about any health care received abroad to inform their care (3).

As exemplified by this episode and other C. auris outbreak investigations, co-colonization with C. auris and CPOs is common in critically ill patients (50% of patients with C. auris are also colonized with a CPO) (9). CPO detection capacity has increased in the United States since 2017, and CDC recommends a public health response to even single cases of unusual resistance, including most CPOs (10). The public health investigation of CPOs should include an assessment of whether the patient had overnight health care exposures in countries where C. auris has been identified; patients not previously screened for C. auris should be promptly tested. In addition, if yeast is identified on any clinical cultures in such patients, it should be identified to the species level regardless of body site source. Confirmatory testing for C. auris, carbapenemase testing for Enterobacteriaceae, Pseudomonas aeruginosa, and Acinetobacter baumannii, and colonization screening for CPOs and C. auris is available free of charge through the Antibiotic Resistance Laboratory Network.* Globally, it is critical to prevent the emergence and spread of highly drug-resistant organisms like C. auris and CPOs. Public health investigations of CPOs could facilitate early detection of C. auris and might lead to earlier detection of this organism, thus preventing its spread.


Heathers Saunders, Tim Blood, Maryland Department of Health Laboratories Administration; CDC Fungus Reference Laboratory.

Corresponding author: Richard B. Brooks,, 410-767-7395.

1Division of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, CDC; 2Infectious Disease Epidemiology and Outbreak Response Bureau, Maryland Department of Health; 3Division of Foodborne, Waterborne, and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, CDC; 4IHRC, Inc., Atlanta, GA.

All authors have completed and submitted the ICMJE form for disclosure of potential conflicts of interest. No potential conflicts of interest were disclosed.


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Suggested citation for this article: Brooks RB, Walters M, Forsberg K, Vaeth E, Woodworth K, Vallabhaneni S. Candida auris in a U.S. Patient with Carbapenemase-Producing Organisms and Recent Hospitalization in Kenya. MMWR Morb Mortal Wkly Rep 2019;68:664–666. DOI:

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