Module 3.3 – Real-time phylogenetics with UShER

Overview: This module provides an introduction to UShERexternal icon, an easy to use web portal for fast phylogenetic tree calculation.

Posted: 03/05/21

Presenter: Russ Corbett-Detig, PhD (view bio)
Assistant Professor, Department of Biomolecular Engineering, University of California, Santa Cruz

Download Presentation Slides pdf icon[PDF – 20 slides]

Further Reading:

1. Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic.external icon
   Turakhia et al. Nat Genet, 2021.

Additional Resources:

1. UShER web portal.external icon
   UCSC, updated 2021.
2. UShER Wiki (documentation and tutorial).external icon
   UCSC, updated 2021.

Hands-on Example:

1. UShER demo instructions, data.external icon