Module 3.2 – Getting started with MicrobeTrace
Overview: This module introduces MicrobeTrace for transmission network analysis using SARS-CoV-2 sequencing and contact tracing data.
Posted: 03/05/21
Presenter: Ellsworth Campbell, MS (view bio)
Computational Biologist, CDC
Download Presentation Slides pdf icon[PDF – 28 slides]
Updated 9-13-21 – New slides 22 and 23 include additional information on MicrobeTrace settings for Nextstrain trees.
Further Reading:
- MicrobeTrace overview.
CDC, 2021.
Additional Resources:
- MicrobeTrace documentation.external icon
CDC, updated 2020. - MicrobeTrace: Retooling molecular epidemiology for rapid public health response.external icon
Campbell, et al. bioRxiv, 2020. - Participation in fraternity and sorority activities and the spread of COVID-19 among residential university communities — Arkansas, August 21–September 5, 2020.
Vang, et al. MMWR, 2021.
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Page last reviewed: September 3, 2021
Content source: Centers for Disease Control and Prevention