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Module 3.1 – Getting started with Nextstrain

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Overview: This module gives an introduction to Nextstrainexternal icon, a powerful tool for interactive tree visualization.

Posted: 01/08/21

Presenter: Michael Weigand, PhD (view bio)
Bioinformatician​, CDC

Download Presentation Slides pdf icon[PDF – 20 slides]

Further Reading:

  1. Nextstrain: real-time tracking of pathogen evolution.external icon
    Hadfield, et al. Bioinformatics, 2018.

Additional Resources:

  1. Tutorials — Nextstrain documentation.external icon
    Nextstrain, updated 2021.
  2. Nextstrain: analysis and visualization of pathogen sequence data.external icon
    Nextstrain, updated 2021.
  3. Nextstrain SARS-CoV-2 resources.external icon
    Nextstrain, updated 2021.
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Page last reviewed: September 3, 2021
Content source: Centers for Disease Control and Prevention