Guidance for Standards-Based Electronic Laboratory Reporting for Influenza
| Test | LOINC : LOINC short name | To report results for each target, use the SNOMED results below: |
|---|---|---|
| Influenza B target | 40982-1 : FLUBV RNA XXX Ql PCR | 260373001 : Detected |
| Influenza A target | 34487-9 : FLUAV RNA XXX Ql PCR | |
| Influenza A/H1 target | 49521-8 : FLUAV H1 RNA XXX Ql PCR | |
| Influenza A/H3 target | 49524-2 : FLUAV H3 RNA XXX Ql PCR | |
| Influenza A pdm A target | 55464-2 : FLUAV swine origin RNA XXX Ql PCR | |
| Influenza A pdm H1 target | 55465-9 : FLUAV H1 2009 pandemic RNA XXX Ql PCR | |
| Influenza A pdm A + pdm H1 targets | 60494-2* : FLUAV H1 2009 pandemic+swine RNA XXX Ql PCR | |
| Influenza A H5a | 68986-9 : FLUAV A H5a RNA XXX Ql PCR | |
| Influenza A H5b | 68987-7 : FLUAV A H5b RNA XXX Ql PCR | |
| Influenza A H5a + H5b targets | 38272-1** : FLUAV H5 RNA XXX Ql PCR | |
| RP target | 68993-5 : Human Rnase P XXX QL PCR | |
| For test only done on Isolates: | ||
| Influenza B target | 49535-8 : FLUBV RNA Islt Ql PCR | |
| Influenza A target | 49531-7 : FLUAV RNA Islt Ql PCR | |
| Influenza A/H1 target | 49520-0 : FLUAV H1 RNA Islt Ql PCR | |
| Influenza A/H3 target | 49523-4 : FLUAV H3 RNA Islt Ql PCR | |
| Influenza A H5a + H5b targets | 49526-7** : FLUAV H5 RNA Islt Ql PCR | |
| Influenza A pdm A target*** | N/A | |
| Influenza A pdm H1 target*** | N/A | |
| Influenza A pdm A + pdm H1 targets*** | N/A | |
| Test | LOINC : LOINC short name | To report results for conclusion value LOINC, use the SNOMED results below: |
|---|---|---|
| To report all targets tested | 48509-4 : FLUAV + FLUBV RNA XXX PCR | 407479009 : Influenza A virus |
| To report all A subtyping targets tested | 59423-4 : FLUAV HA RNA XXX PCR | |
| For test only done on Isolates: | ||
| To report all targets tested | 49537-4 : FLUAV + FLUBV RNA Islt PCR | |
| To report all A subtyping targets tested | 59424-2 : FLUAV HA RNA Islt PCR | |
*Combines both targets needed to result Influenza A 2009 H1N1
**Combines both targets needed to result Influenza A/H5
***LOINC not yet available for these targets; for now, please use the non-isolate-specific codes above.
****Only use with 60494-2 or 38272-1
| Results: | CDC Reporting for Surveillance | ||
|---|---|---|---|
| Example: Flu A + Flu B screen, with Flu A detected - no subtyping done - this is NOT recommended by CDC | |||
| 40982-1 | FLUBV RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 34487-9 | FLUAV RNA XXX Ql PCR | + | 260373001ˆdetectedˆSCT |
| 68993-5 | RP | + / − | |
| **OR** | |||
| 48509-4 | FLUAV + FLUBV RNA XXX PCR | Influenza A detected Subtyping not performed | 407479009ˆInfluenza A virus |
| Example: Flu A + Flu B screen, with Flu B detected | |||
| 40982-1 | FLUBV RNA XXX Ql PCR | + | 260373001ˆdetectedˆSCT |
| 34487-9 | FLUAV RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 68993-5 | RP | + / − | |
| **OR** | |||
| 48509-4 | FLUAV + FLUBV RNA XXX PCR | Influenza B detected | 407480007ˆInfluenza B virus |
| Example: Flu A + Flu B screen, Influenza not detected | |||
| 40982-1 | FLUBV RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 34487-9 | FLUAV RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 68993-5 | RP | + | |
| **OR** | |||
| 48509-4 | FLUAV + FLUBV RNA XXX PCR | Influenza NOT detected | 260415000ˆNot detectedˆSCT |
| Example: Flu A + Flu A subtyping, with Flu A positive and Flu A subtyping for H3 | |||
| 34487-9 | FLUAV RNA XXX Ql PCR | + | 260373001ˆdetectedˆSCT |
| 55465-9 | FLUAV H1 2009 pandemic RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 55464-2 | FLUAV swine origin RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 49524-2 | FLUAV H3 RNA XXX Ql PCR | + | 260373001ˆdetectedˆSCT |
| 49521-8 | FLUAV H1 RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 68993-5 | RP | + / − | |
| **OR** | |||
| 59423-4 | FLUAV HA RNA XXX PCR | Influenza A detected Subtype: H3 detected | 446645007ˆInfluenza A virus subtype H3ˆSCT |
| **OR** | |||
| 48509-4 | FLUAV + FLUBV RNA XXX PCR | Influenza A detected Subtype: H3 detected | 446645007ˆInfluenza A virus subtype H3ˆSCT |
| Example: Flu A + Flu A subtyping, with Flu A positive and Flu A subtyping for H12009pdm | |||
| 34487-9 | FLUAV RNA XXX Ql PCR | + | 260373001ˆdetectedˆSCT |
| 55465-9 | FLUAV H1 2009 pandemic RNA XXX Ql PCR | + | 260373001ˆdetectedˆSCT |
| 55464-2 | FLUAV swine origin RNA XXX Ql PCR | + | 260373001ˆdetectedˆSCT |
| 49524-2 | FLUAV H3 RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 49521-8 | FLUAV H1 RNA XXX Ql PCR | − | 260415000ˆNot detectedˆSCT |
| 68993-5 | RP | + / − | |
| **OR** | |||
| 59423-4 | FLUAV HA RNA XXX PCR | Influenza A detected Subtype: 2009 H1 detected | 221000124104ˆInfluenza A virus subtype H1 2009 pandemic strainˆSCT |
| **OR** | |||
| 48509-4 | FLUAV + FLUBV RNA XXX PCR | Influenza A detected Subtype: 2009 H1 detected | 221000124104ˆInfluenza A virus subtype H1 2009 pandemic strainˆSCT |
