Volume 30, Number 4—April 2024
Research
Crimean-Congo Hemorrhagic Fever Virus Diversity and Reassortment, Pakistan, 2017–2020
Massab Umair1
, Zaira Rehman1, Shannon Whitmer, Melissa Mobley, Ammad Fahim, Aamer Ikram, Muhammad Salman, Joel M. Montgomery, and John D. Klena
, Zaira Rehman1, Shannon Whitmer, Melissa Mobley, Ammad Fahim, Aamer Ikram, Muhammad Salman, Joel M. Montgomery, and John D. Klena
Table 2
Genotypes of Crimean-Congo hemorrhagic fever viruses isolated from patients in Pakistan, 2017–2020*
| Sample nos. | Strain name | District | Province/region | Collection date | Genotype |
GenBank accession nos. | ||
|---|---|---|---|---|---|---|---|---|
| L | M | S | ||||||
| 1 |
NIH-PAK-CCHF-257_2017 |
Peshawar |
Khyber Pakhtunkhwa |
2017 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162030–2 |
| 2 |
NIH-PAK-CCHF-272_2017 |
Peshawar |
Khyber Pakhtunkhwa |
2017 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162033–5 |
| 3 |
NIH-PAK-CCHF-273_2017 |
Peshawar |
Khyber Pakhtunkhwa |
2017 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162036–8 |
| 4 |
NIH-PAK-CCHF-274_2017 |
Peshawar |
Khyber Pakhtunkhwa |
2017 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162039–41 |
| 5 |
NIH-PAK-CCHF-275_2017 |
Rawalpindi |
Punjab |
2017 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162042–4 |
| 6 |
NIH-PAK-CCHF-104_2018 |
Khyber Agency |
Khyber Pakhtunkhwa |
2018 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162096–8 |
| 7 |
NIH-PAK-CCHF-86_2018 |
Rawalpindi |
Punjab |
2018 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162099–101 |
| 8 |
NIH-PAK-CCHF-84_2018 |
Islamabad |
Islamabad |
2018 |
Asia-1 |
Asia-2 |
Asia-2 |
OM162102–4 |
| 9 |
NIH-PAK-CCHF-119_2018 |
Islamabad |
Islamabad |
2018 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162105–7 |
| 10 |
NIH-PAK-CCHF-65_2018 |
Multan |
Punjab |
2018 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162108–10 |
| 11 |
NIH-PAK-CCHF-73_2018 |
Multan |
Punjab |
2018 |
Asia-1 |
NA |
Asia-1 |
OM162111–2 |
| 12 |
NIH-PAK-CCHF-56_2018 |
Chakwal |
Punjab |
2018 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162113–5 |
| 13 |
NIH-PAK-CCHF-43_2018 |
Rawalpindi |
Punjab |
2018 |
Asia-1 |
Asia-1 |
Asia-2 |
OM162116–8 |
| 14 |
NIH-PAK-CCHF-44_2018 |
Mianwali |
Punjab |
2018 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162119–21 |
| 15 |
NIH-PAK-CCHF-19_2018 |
Multan |
Punjab |
2018 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162122–4 |
| 16 |
NIH-PAK-CCHF-18_2019 |
Rawalpindi |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162027–9 |
| 17 |
NIH-PAK-CCHF-20_2019 |
Jamshoro |
Sindh |
2019 |
Asia-1 |
Asia-2 |
Asia-1 |
OM162045–7 |
| 18 |
NIH-PAK-CCHF-27_2019 |
Lodhran |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162048–50 |
| 19 |
NIH-PAK-CCHF-28_2019 |
DG Khan |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162051–3 |
| 20 |
NIH-PAK-CCHF-80_2019 |
Rawalpindi |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162054–6 |
| 21 |
NIH-PAK-CCHF-61_2019 |
Peshawar |
Khyber Pakhtunkhwa |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162057–9 |
| 22 |
NIH-PAK-CCHF-65_2019 |
Gujrat |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162060–2 |
| 23 |
NIH-PAK-CCHF-97_2019 |
Karachi |
Sindh |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162063–5 |
| 24 |
NIH-PAK-CCHF-86_2019 |
Rawalpindi |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162066–8 |
| 25 |
NIH-PAK-CCHF-95_2019 |
Lahore |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162069–71 |
| 26 |
NIH-PAK-CCHF-156_2019 |
Chakwal |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162072–4 |
| 27 |
NIH-PAK-CCHF-92_2019 |
DG Khan |
Punjab |
2019 |
NA |
NA |
Asia-1 |
OM162075 |
| 28 |
NIH-PAK-CCHF-159_2019 |
Bahawalpur |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162076–8 |
| 29 |
NIH-PAK-CCHF-168_2019 |
Islamabad |
Islamabad |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162079–81 |
| 30 |
NIH-PAK-CCHF-190_2019 |
Haripur |
Khyber Pakhtunkhwa |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162082–4 |
| 31 |
NIH-PAK-CCHF-222_2019 |
Rawalpindi |
Punjab |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162085–7 |
| 32 |
NIH-PAK-CCHF-233_2019 |
Rawalpindi |
Punjab |
2019 |
Asia-1 |
Africa-2 |
Asia-1 |
OM162088–90 |
| 33 |
NIH-PAK-CCHF-279_2019 |
Islamabad |
Islamabad |
2019 |
Asia-1 |
NA |
Asia-2 |
OM162091–2 |
| 34 |
NIH-PAK-CCHF-14_2019 |
Karachi |
Sindh |
2019 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162093–5 |
| 35 |
NIH-PAK-CCHF-509_2020 |
Rawalpindi |
Punjab |
2020 |
Asia-1 |
Asia-1 |
Asia-1 |
OM162125–7 |
| 36 | NIH-PAK-CCHF-510_2020 | Peshawar | Khyber Pakhtunkhwa | 2020 | Asia-1 | Asia-1 | Asia-1 | OM162128–30 |
*Genotypes were determined by whole-genome sequencing of L, M, and S virus segments. L, large; M, medium; NA, not applicable; S, small.
1These authors contributed equally to this article.
Page created: January 31, 2024
Page updated: March 20, 2024
Page reviewed: March 20, 2024
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