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Volume 25, Number 5—May 2019
Dispatch

Nipah Virus Sequences from Humans and Bats during Nipah Outbreak, Kerala, India, 2018

Pragya D. Yadav, Anita M. Shete, G. Arun Kumar, Prasad Sarkale, Rima R. Sahay, Chandni Radhakrishnan, Rajen Lakra, Prachi Pardeshi, Nivedita Gupta, Raman R. Gangakhedkar, V.R. Rajendran, Rajeev Sadanandan, and Devendra T. MouryaComments to Author 
Author affiliations: Indian Council of Medical Research–National Institute of Virology, Pune, India (P.D. Yadav, A.M. Shete, P. Sarkale, R.R. Sahay, R. Lakra, P. Pardeshi, D.T. Mourya); Manipal Centre for Virus Research, Manipal, India (G.A. Kumar); Government Medical College Kozhikode, Kozhikode, India (C. Radhakrishnan, V.R. Rajendran); Indian Council of Medical Research, New Delhi, India (N. Gupta, R.R. Gangakhedkar); Health & Family Welfare, Kerala (R. Sadanandan)

Main Article

Table 2

Percentage of nucleotide and amino acid divergence and similarity of Nipah virus strains from the MH523642_NV/IN/HU/2018/Kerala_isolate from India*

GenBank sequence of NiV
 Partial genome
Complete genome
Nucleotide divergence, %
 Amino acid divergence, %
 Nucleotide similarity, %
 Amino acid similarity, %
 Nucleotide divergence, %
 Amino acid divergence, %
 Nucleotide similarity, %
 Amino acid similarity, %
MH523645_NV/IN/bat/2018/15/Kerala 0.3 1.1 99.7 98.9 NA NA NA NA
MH523644_NV/IN/bat/2018/Kerala 0.0 0.0 100.0 100.0 NA NA NA NA
MH523643_NV/IN/bat/2018/Kerala 0.6 1.1 99.4 98.9 NA NA NA NA
MH523641_NV/IN/HU/2018/Kerala 0.0 0.0 100.0 100.0 0.0 0.0 100.0 100.0
MH523640_NV/IN/HU/2018/Kerala 0.0 0.0 100.0 100.0 0.0 0.0 100.0 100.0
MH423323_NV/IN/HU/2018/Kerala/H1087_urine 0.0 0.0 100.0 100.0 0.0 0.0 100.0 100.0
MH396625_NV/IN/HU/2018/Kerala_CS 0.0 0.0 100.0 100.0 NA NA NA NA
KT163256.1_NV/isolate_33654/2011/Thailand 2.8 5.3 97.2 94.7 NA NA NA NA
KT163247.1_NV/isolate_1753/2010/Thailand 9.2 21.3 90.8 78.7 NA NA NA NA
KM034755.1_NiV_KD_C313_KH13/2013/Cambodia 8.9 21.3 91.1 78.7 NA NA NA NA
JN808864.1_NV/BD/HU/2010/Faridpur 1.9 3.2 98.1 96.8 2.1 4.8 97.9 95.2
JN808863.1_NV/BD/HU/2008/RAJBARI 2.8 6.4 97.2 93.6 2.2 4.8 97.8 95.2
JN808857.1_NV/BD/HU/2008/MA 2.8 6.4 97.2 93.6 2.2 4.8 97.8 95.2
FN869553.1_NV/MY/PV/2008/perak 9.8 22.3 90.2 77.7 7.1 14.9 92.9 85.1
FJ513078.1_NV/IN/HU/2007/FG 2.5 5.3 97.5 94.7 2.2 4.8 97.8 95.2
AY988601.1_NV/BD/HU/2004/RA1 2.2 4.3 97.8 95.7 2.1 4.7 97.9 95.3
AY858110.1_NV/KHM/CSUR381/Cambodia 10.1 22.3 89.9 77.7 NA NA NA NA
AY029768.1_NV/MY/HU/1999/UM2 10.1 22.3 89.9 77.7 8.6 17.1 91.4 82.9
AY029767.1_NV/MY/HU/1999/UM1 10.1 22.3 89.9 77.7 8.6 17.1 91.4 82.9
AJ627196.1_NV/MY/PI/1999/VRI-0626 10.1 22.3 89.9 77.7 8.6 17.1 91.4 82.9
AJ564623.1_NV/MY/HU/1999/UM-0128 10.1 22.3 89.9 77.7 8.6 17.1 91.4 82.9
AJ564622.1_NV/MY/PI/1999/VRI-1413 10.1 22.3 89.9 77.7 8.5 17.1 91.5 82.9
AJ564621.1_NV/MY/PI/1999/VRI-2794 10.1 22.3 89.9 77.7 8.6 17.1 91.4 82.9
AF212302.2_NV/MY/HU/1999/CDC 10.1 22.3 89.9 77.7 8.6 17.1 91.4 82.9

*NA, not applicable.

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Page created: April 18, 2019
Page updated: April 18, 2019
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