Technical Publications and Standards
Onboarding Materials

- Onboarding Guide and Resources
- Master Facility Table (MFT) Data Reference Guideexcel icon
- Facility BOPApdf icon
Electronic fillable PDF to acknowledge having read about the BioSense Platform onboarding process. For facility use only. - Site BOPApdf icon
Electronic fillable PDF to acknowledge having read about the BioSense Platform onboarding process. For site use only.
Quick Start Guides
- Quick Start Guide to Using ESSENCEpdf icon
- Quick Start Guide to Using RStudio Propdf icon
- Quick Start Guide to Using the AMC Data Access Rulespdf icon
- Quick Start Guide to Using the Master Facility Table (MFT)pdf icon
- Quick Start Guide to Using the Daily Site Processing Summarypdf icon
- Quick Start Guide to Using the Access & Management Center Release 1.5.4 Enhancements pdf icon
User Manuals
- BioSense Platform User Manual for the Access & Management Centerpdf icon
- BioSense Platform User Manual for the Data Quality Dashboardpdf icon
- BioSense Platform User Manual for Data-Quality-on-Demand Programspdf icon
- BioSense Platform User Manual for SAS Studiopdf icon
Data Dictionaries
- Commercial Lab Data Dictionaryexcel icon – This dictionary includes data elements and processing rules for six commercial (anonymized) laboratories.
- Laboratory User Tablesexcel icon – This file includes three tables: an analytic data dictionary and lookup tables for the laboratory test categorizations and laboratory result categorizations.
- NSSP Data Dictionaryexcel icon – This dictionary provides details on data elements stored in NSSP data tables. The Archive Processed table worksheet—1 of 14 worksheets in this document—links to the Public Health Information Network Vocabulary Access and Distribution System (PHIN VADS) website for specific data elements associated with a standard. PHIN VADS is a web-based enterprise vocabulary system for accessing, searching, and distributing vocabularies used in public health and clinical care practice. It promotes the use of standards-based vocabulary to support the exchange of consistent information among public health partners. (No password is required to access document.)
- Data Dictionary: Data Elements Used in NSSP Data Processing Journey (handout)pdf icon – This handout provides an easy-to-understand description of the Data Dictionary Excel guidance document. The “journey” explains data processing steps, tables, and data elements.
Message Mapping Guides
CDC, in collaboration with the International Society for Disease Surveillance, has developed and published syndromic surveillance messaging guides. These guides support Meaningful Use/Promoting Interoperability programs that employ health information technology to improve the quality and value of American healthcare. To access and use the HL7 implementation guides for the Syndromic Surveillance Meaningful Use/Promoting Interoperability objectives, please see the table below.
HL7 Implementation Guides
Document | Transaction | Standard(s) Used | Status |
---|---|---|---|
HL7 Version 2.5.1 Implementation Guide: Syndromic Surveillance, Release 1 – US Realm, Standard for Trial Use, July 2019 *Current Document searchable at HL7.orgexternal icon **login or sign up required for download Access Instructions: go to Standards and then Standards for Trial Use, scroll to or search Syndromic Surveillance guide (close date July 26, 2021) |
Syndromic surveillance is a process that regularly and systematically uses health and health-related data in near “real-time” to make information available on the health of a community. This information includes statistics on disease trends and community health-seeking behaviors that support essential public health surveillance functions in governmental public health authorities (PHAs). | HL7 Version 2.5.1,
ICD-10-CM, SNOMED-CT, LOINC, Rx Norm, UCUM, CPT4 |
The following decisions were made by the ISDS Message Guide Workgroup as well as the changes to streamline and reduce redundancies from previous versions of the guide:
|
PHIN Messaging Guide for Syndromic Surveillance: Emergency Department, Urgent Care, Inpatient and Ambulatory Care Settings, Release 2.0 (April, 2015)pdf icon | Sending data from emergency department, urgent, ambulatory care and inpatient settings to public health authorities
Certifying 2014 Edition Meaningful Use electronic health record technology |
HL7 2.5.1
HL7v2 |
Published |
PHIN Messaging Guide For Syndromic Surveillance: Emergency Department, Urgent Care And Inpatient Settings, Release 1.9 (April 2013)pdf icon | Biosurveillance
(Currently not referenced for EHR certification) |
HL7 2.5.1
(Version 2.3.1 Compatible) This guide is suggested for future Meaningful Use Stages. |
Published |
PHIN Messaging Guide for Syndromic Surveillance: Emergency Department and Urgent Care Data, Release 1.1 (August 2012),Testing Clarification Release 1.2 (February 2013)pdf icon | Biosurveillance
(ONC Certification Criteria for EHR Technology, 2014 Ed.) |
HL7 2.5.1
(Version 2.3.1 Compatible) Meaningful Use Stage 2 (October 2013 start) |
Published |
PHIN Messaging Guide for Syndromic Surveillance: Emergency Department and Urgent Care Data, Release 1.1 (August 2012)pdf icon | Biosurveillance
(ONC Certification Criteria for EHR Technology, 2014 Ed.) |
HL7 2.5.1
(Version 2.3.1 Compatible) Meaningful Use Stage 2 (October 2013 start) |
Published |
PHIN Messaging Guide for Syndromic Surveillance: Emergency Department and Urgent Care Data, Addendum Release 1.1 (August 2012)pdf icon | Biosurveillance
(ONC Certification Criteria for EHR Technology, 2014 Ed.) |
HL7 2.5.1
(Version 2.3.1 Compatible) Meaningful Use Stage 2 (October 2013 start) |
Published |
PHIN Messaging Guide for Syndromic Surveillance: Emergency Department and Urgent Care Data, Release 1 (October 2011)pdf icon | Biosurveillance
(Suggested for use with EHR Certification 2011 ed.) |
HL7 2.5.1
(Version 2.3.1 Compatible) |
Published |
Standards and Guidance
- HL7 Messaging Standard Version 2.5.1 (HL7 Manual)zip iconexternal icon
HL7 messages support the exchange, integration, sharing, and retrieval of electronic health information.
Note: This guidance can be found on the Health Level Seven International website (HL7.org). Access requires setting up a user account. - National Institute for Standards and Technology (NIST) HL7 V2.5.1 Syndromic Surveillance Validation Tool – Meaningful Use 2014 Editionexternal icon
Before onboarding, HL7 messages must pass this compliance check. - NIST Syndromic Surveillance Test Suiteexternal icon
Data validation tools. - Public Health Information Network (PHIN) Vocabulary Access and Distribution System (VADS)
Standards-based vocabulary within PHIN systems foster the use and exchange of consistent information among public health partners.
NSSP Glossary
Access our glossary of terms associated with the National Syndromic Surveillance Program.