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Development of a fungus-specific PCR assay for detecting low-level fungi in an indoor environment.

Zhou G; Whong WZ; Ong T; Chen B

Mol Cell Probes 2000 Dec; 14(6):339-348

https://doi.org/10.1006/mcpr.2000.0324

20020872

A fungus-specific PCR assay using only one primer set has been developed for detecting indoor fungi. Four fungal primer sets, NS3/NS4, NS5/NS6, FF1/FR1 and FF2/FR1, were tested with DNA from humans, rats, mice, bacteria, pollens and six commonly found fungal species (Alternaria chamydospora, Aspergillus flavus, Candida famata, Cladosporium fermentans, Penicillium chrycoIgenum and Stachybotrys chartarum). Results indicated that, although all four primer sets could amplify the fungal DNA, only FF2/FR1 demonstrated no cross-amplification with non-fungal DNA. In addition, these amplified fragments were sequenced to ensure that they indeed matched known fungal DNA sequences. Furthermore, besides the tested fungi, eighteen more genera of fungal sequences were examined and found to match the FF2/FR1. Here, the method of bead-beating was identified as the most effective way for spore breakage and fungal DNA release. The PCR amplification efficiency and potential inhibition were examined using different process solutions and preparation procedures. It was found that, when using 20% nutrient media and homogenization-first procedure, a higher amplification efficiency with less inhibition was achieved. Although positive bands were observed at 0.2 fungal spore/reaction using the homogenization-first procedure, the sensitivity of this assay would be two fungal spores/reaction for environmental samples.

Fungicides; Fungi; Environmental factors; Laboratory animals; Animals; Animal studies; Bacterial cultures; Bacteria; Sampling; Microorganisms; Author Keywords: fungus-specific primer; indoor fungi; 18 S rRNA; PCR; indoor air quality

Health Effects Laboratory Division, NIOSH, 1095 Willowdale Road, Morgantown, WV 26505, USA

20001201

Journal Article

bdc4@cdc.gov

2001

6

0890-8508

HELD

Molecular and Cellular Probes

WV