F2 Allele and Genotype Frequencies



Available polymorphism(s)

Common Designations

rs number

Nucleotide change Amino acid change

Genotyping method

rs1799963

Ex14-1G>A Pyrosequencing


By Race/Ethnicity

Variant Race-ethnicity Allele
% (95% CI)
Chi-square
P-value†
Genotype
% (95% CI)
Chi-square
P-value†
HW
P-value‡
rs1799963 A G AA AG GG
Non-Hispanic White 1.1 (0.8, 1.7) 98.9 (98.3, 99.2) 0.001 0 (NA) 2.3 (1.5, 3.4) 97.7 (96.6, 98.5) 0.001 0.51
Non-Hispanic Black 0.3 (0.1, 0.5) 99.7 (99.5, 99.9) 0 (NA) 0.5 (0.3, 1.1) 99.5 (98.9, 99.7) 0.88
Mexican American 1.1 (0.7, 1.7) 98.9 (98.3, 99.3) 0 (NA) 2.2 (1.5, 3.4) 97.8 (96.6, 98.5) 0.63
Total* 1.0 (0.7, 1.3) 99.0 (98.7, 99.3) 0 (NA) 1.9 (1.4, 2.7) 98.1 (97.3, 98.6)

* Includes all U.S. race/ethnic groups.
† “other” race/ethnicity category was not included in chi-square tests.
‡ P-values from unweighted chi-square goodness-of-fit tests to test for deviations from Hardy-Weinberg (HW) proportions.

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By Age*

Variant Age (years) Allele
% (95% CI)
Chi-square
P-value
Genotype
% (95% CI)
Chi-square
P-value
rs1799963 A G AA AG GG
12-19 0.8 (0.4, 1.6) 99.2 (98.4, 99.6) 0.080 0 (NA) 1.5 (0.7, 3.2) 98.5 (96.8, 99.3) 0.103
20-39 0.6 (0.3, 1.2) 99.4 (98.8, 99.7) 0 (NA) 1.2 (0.6, 2.4) 98.8 (97.6, 99.4)
40-59 1.3 (0.8, 2.2) 98.7 (97.8, 99.2) 0 (NA) 2.7 (1.6, 4.5) 97.3 (95.5, 98.4)
>=60 1.3 (0.9, 1.8) 98.7 (98.2, 99.1) 0 (NA) 2.5 (1.8, 3.6) 97.5 (96.4, 98.2)
Total 1.0 (0.7, 1.3) 99.0 (98.7, 99.3) 0 (NA) 1.9 (1.4, 2.7) 98.1 (97.3, 98.6)

* Includes all participants, regardless of race/ethnicity.

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By Sex*

Variant Sex Allele
% (95% CI)
Chi-square
P-value
Genotype
% (95% CI)
Chi-square
P-value
rs1799963 A G AA AG GG
Male 0.9 (0.6, 1.3) 99.1 (98.7, 99.4) 0.611 0 (NA) 1.8 (1.2, 2.7) 98.2 (97.3, 98.8) 0.618
Female 1.0 (0.7, 1.6) 99.0 (98.4, 99.3) 0 (NA) 2.0 (1.3, 3.1) 98.0 (96.9, 98.7)
Total 1.0 (0.7, 1.3) 99.0 (98.7, 99.3) 0 (NA) 1.9 (1.4, 2.7) 98.1 (97.3, 98.6)

* Includes all participants, regardless of race/ethnicity.

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By Race/Ethnicity and Age

Variant Race-ethnicity Age (years) Allele
% (95% CI)
Genotype
% (95% CI)
rs1799963 A G AA AG GG
Non-Hispanic White 12-19 1.0 (0.4, 2.1) 99.0 (97.9, 99.6) 0 (NA) 1.9 (0.8, 4.2) 98.1 (95.8, 99.2)
20-39 0.7 (0.3, 1.6) 99.3 (98.4, 99.7) 0 (NA) 1.4 (0.6, 3.2) 98.6 (96.8, 99.4)
40-59 1.6 (0.9, 2.8) 98.4 (97.2, 99.1) 0 (NA) 3.2 (1.8, 5.6) 96.8 (94.4, 98.2)
>=60 1.4 (1.0, 2.1) 98.6 (97.9, 99.0) 0 (NA) 2.8 (1.9, 4.1) 97.2 (95.9, 98.1)
Non-Hispanic Black 12-19 0.3 (0.1, 1.2) 99.7 (98.8, 99.9) 0 (NA) 0.6 (0.2, 2.4) 99.4 (97.6, 99.8)
20-39 0.3 (0.1, 0.8) 99.7 (99.2, 99.9) 0 (NA) 0.5 (0.2, 1.6) 99.5 (98.4, 99.8)
40-59 0.2 (0.1, 0.8) 99.8 (99.2, 99.9) 0 (NA) 0.4 (0.1, 1.6) 99.6 (98.4, 99.9)
>=60 0.3 (0.1, 1.0) 99.7 (99.0, 99.9) 0 (NA) 0.5 (0.1, 2.1) 99.5 (97.9, 99.9)
Mexican American 12-19 0.9 (0.3, 2.7) 99.1 (97.3, 99.7) 0 (NA) 1.8 (0.6, 5.4) 98.2 (94.6, 99.4)
20-39 1.2 (0.7, 2.0) 98.8 (98.0, 99.3) 0 (NA) 2.4 (1.4, 3.9) 97.6 (96.1, 98.6)
40-59 1.0 (0.5, 1.9) 99.0 (98.1, 99.5) 0 (NA) 2.0 (1.1, 3.7) 98.0 (96.3, 98.9)
>=60 1.4 (0.6, 3.6) 98.6 (96.4, 99.4) 0 (NA) 2.9 (1.1, 7.2) 97.1 (92.8, 98.9)

By Race/Ethnicity and Sex

Variant Race-ethnicity Sex Allele
% (95% CI)
Genotype
% (95% CI)
rs1799963 A G AA AG GG
Non-Hispanic White Male 1.1 (0.7, 1.7) 98.9 (98.3, 99.3) 0 (NA) 2.2 (1.4, 3.5) 97.8 (96.5, 98.6)
Female 1.2 (0.7, 1.9) 98.8 (98.1, 99.3) 0 (NA) 2.3 (1.4, 3.8) 97.7 (96.2, 98.6)
Non-Hispanic Black Male 0.2 (0.0, 0.6) 99.8 (99.4, 100.0) 0 (NA) 0.3 (0.1, 1.2) 99.7 (98.8, 99.9)
Female 0.4 (0.2, 0.7) 99.6 (99.3, 99.8) 0 (NA) 0.7 (0.4, 1.4) 99.3 (98.6, 99.6)
Mexican American Male 0.8 (0.5, 1.2) 99.2 (98.8, 99.5) 0 (NA) 1.6 (1.0, 2.4) 98.4 (97.6, 99.0)
Female 1.4 (0.8, 2.5) 98.6 (97.5, 99.2) 0 (NA) 2.9 (1.7, 5.0) 97.1 (95.0, 98.3)

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Page last reviewed: March 16, 2009 (archived document)