|
|
Research
Genotyping, Orientalis-like
Yersinia pestis, and Plague Pandemics
Michel Drancourt,* Véronique Roux,* La Vu Dang,* Lam Tran-Hung,* Dominique
Castex,† Viviane Chenal-Francisque,‡ Hiroyuki Ogata,§ Pierre-Edouard Fournier,*
Eric Crubézy,¶ and Didier Raoult*
*Université de la Méditerranée, Marseille, France; †Université de Bordeaux,
Talence, France; ‡Institut Pasteur, Paris, France; §Information Génomique
et Structurale, Marseille, France; and ¶Université Paul Sabatier, Toulouse,
France
| Appendix 3. Comparison
of Yp1 spacer sequence derived from ancient specimens with our local
spacer sequence databasea |
|
|
Yersinia pestis strains
|
Score (bits)
|
E value
|
|
|
Antiqua 545
|
773
|
0.0
|
|
Antiqua 677
|
773
|
0.0
|
|
Antiqua 566
|
773
|
0.0
|
|
Antiqua 553
|
773
|
0.0
|
|
Antiqua 544
|
773
|
0.0
|
|
Antiqua 550
|
773
|
0.0
|
|
Antiqua 542
|
773
|
0.0
|
|
Antiqua 549
|
773
|
0.0
|
|
Orientalis 1537
|
773
|
0.0
|
|
Orientalis 989
|
773
|
0.0
|
|
Orientalis 695
|
773
|
0.0
|
|
Orientalis 643
|
773
|
0.0
|
|
Orientalis 613
|
773
|
0.0
|
|
Orientalis 571
|
773
|
0.0
|
|
Orientalis 1513
|
773
|
0.0
|
|
Orientalis 507
|
773
|
0.0
|
|
Orientalis CO92
|
773
|
0.0
|
|
Orientalis 685
|
773
|
0.0
|
|
Antiqua 611
|
773
|
0.0
|
|
Antiqua 552
|
773
|
0.0
|
|
Antiqua 548
|
773
|
0.0
|
|
Antiqua 304
|
773
|
0.0
|
|
Medievalis 1594
|
305
|
4e-86
|
|
Medievalis 670
|
305
|
4e-86
|
|
Medievalis 617
|
305
|
4e-86
|
|
Medievalis 561
|
305
|
4e-86
|
|
Medievalis 560
|
305
|
4e-86
|
|
Medievalis 520
|
305
|
4e-86
|
|
Medievalis 518
|
305
|
4e-86
|
|
Medievalis 557
|
305
|
4e-86
|
|
Medievalis 565
|
305
|
4e-86
|
|
Medievalis 564
|
305
|
4e-86
|
|
| aSequences in our
database that produced significant alignments are indicated. |
|
