|
|
Research
Genotyping, Orientalis-like
Yersinia pestis, and Plague Pandemics
Michel Drancourt,* Véronique Roux,* La Vu Dang,* Lam Tran-Hung,* Dominique
Castex,† Viviane Chenal-Francisque,‡ Hiroyuki Ogata,§ Pierre-Edouard Fournier,*
Eric Crubézy,¶ and Didier Raoult*
*Université de la Méditerranée, Marseille, France; †Université de Bordeaux,
Talence, France; ‡Institut Pasteur, Paris, France; §Information Génomique
et Structurale, Marseille, France; and ¶Université Paul Sabatier, Toulouse,
France
| Appendix 2. Results
of BLAST comparisons obtained with ancient Yersinia pestis
sequences compared with GenBanka |
|
|
GenBank accession no.
|
Y. pestis strains
|
Score (bits)
|
E value
|
|
|
AJ414158
|
CO92
|
773
|
0.0
|
|
AE013696
|
KIM
|
339
|
2e-90
|
|
AJ414156
|
CO92
|
339
|
2e-90
|
|
AE013666
|
KIM
|
337
|
9e-90
|
|
AJ414142
|
CO92
|
337
|
9e-90
|
|
AE013658
|
KIM
|
335
|
4e-89
|
|
AJ414143
|
CO92
|
335
|
4e-89
|
|
AE013654
|
KIM
|
333
|
2e-90
|
|
AJ414141
|
CO92
|
333
|
1e-88
|
|
AE013762
|
KIM
|
331
|
1e-88
|
|
AE014013
|
KIM
|
331
|
6e-88
|
|
AE013955
|
KIM
|
331
|
6e-88
|
|
AE013932
|
KIM
|
331
|
6e-88
|
|
AE013931
|
KIM
|
331
|
6e-88
|
|
AE013879
|
KIM
|
331
|
6e-88
|
|
AE013736
|
KIM
|
331
|
6e-88
|
|
AE013733
|
KIM
|
331
|
6e-88
|
|
AE013725
|
KIM
|
331
|
6e-88
|
|
AE013712
|
KIM
|
331
|
6e-88
|
|
AJ414160
|
CO92
|
331
|
6e-88
|
|
| aSequences in GenBank
produced significant alignments with the Yp1 sequence from skeleton
5. |
|
