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Genomics & Health Impact Update

The Office of Public Health Genomics (OPHG) provides updated and credible information on how genomic information and family health history can improve health and influence policy and practice.


CDC-Authored Publications 2014

Discordance between Self-Report and Genetic Confirmation of Sickle Cell Disease Status in African-American Adults.
Bean CJ, Hooper WC, Ellingsen D, Debaun MR, Sonderman J, Blot WJ. Public Health Genomics. 2014 Mar 28.

Phylogenetic and epidemiologic evidence of multiyear incubation in human rabies
Boland TA, McGuone D, Jindal J, Rocha M, Cumming M, Rupprecht CE, Barbosa TF, de Novaes Oliveira R, Chu CJ, Cole AJ, Kotait I, Kuzmina NA, Yager PA, Kuzmin IV, Hedley-Whyte ET, Brown CM, Rosenthal ES. Ann Neurol. 2014 Jan;75(1):155-60.

Phenylketonuria Scientific Review Conference: State of the science and future research needs.
Camp KM, Parisi MA, Acosta PB, Berry GT, Bilder DA, Blau N, Bodamer OA, Brosco JP, Brown CS, Burlina AB, Burton BK, Chang CS, Coates PM, Cunningham AC, Dobrowolski SF, Ferguson JH, Franklin TD, Frazier DM, Grange DK, Greene CL, Groft SC, Harding CO, Howell RR, Huntington KL, Hyatt-Knorr HD, Jevaji IP, Levy HL, Lichter-Konecki U, Lindegren ML, Lloyd-Puryear MA, Matalon K, Macdonald A, McPheeters ML, Mitchell JJ, Mofidi S, Moseley KD, Mueller CM, Mulberg AE, Nerurkar LS, Ogata BN, Pariser AR, Prasad S, Pridjian G, Rasmussen SA, Reddy UM, Rohr FJ, Singh RH, Sirrs SM, Stremer SE, Tagle DA, Thompson SM, Urv TK, Utz JR, van Spronsen F, Vockley J, Waisbren SE, Weglicki LS, White DA, Whitley CB, Wilfond BS, Yannicelli S, Young JM.
Mol Genet Metab. 2014 Mar 6. pii: S1096-7192(14)00085-7.

Horizon scanning for translational genomic research beyond bench to bedside.
Clyne M, Schully SD, Dotson WD, Douglas MP, Gwinn M, Kolor K, Wulf A, Bowen MS, Khoury MJ.

DNA barcoding for the identification of sand fly species (Diptera, psychodidae, phlebotominae) in Colombia.
Contreras Gutiérrez MA, Vivero RJ, Vélez ID, Porter CH, Uribe S. PLoS One. 2014 Jan 15;9(1):e85496.

Deep sequencing of viral genomes provides insight into the evolution and pathogenesis of varicella zoster virus and its vaccine in humans
Depledge DP, Kundu S, Jensen NJ, Gray ER, Jones M, Steinberg S, Gershon A, Kinchington PR, Schmid DS, Balloux F, Nichols RA, Breuer J. Mol Biol Evol. 2014 Feb;31(2):397-409.

Carbapenem-Resistant Klebsiella pneumoniae Producing New Delhi Metallo-β-Lactamase at an Acute Care Hospital, Colorado, 2012.
Epson EE, Pisney LM, Wendt JM, Maccannell DR, Janelle SJ, Kitchel B, Rasheed JK, Limbago BM, Gould CV, Kallen AJ, Barron MA, Bamberg WM. Infect Control Hosp Epidemiol. 2014 Apr;35(4):390-7.

Draft genome sequence of Mortierella alpina isolate CDC-B6842.
Etienne KA, Chibucos MC, Su Q, Orvis J, Daugherty S, Ott S, Sengamalay NA, Fraser CM, Lockhart SR, Bruno VM. Genome Announc. 2014 Jan 23;2(1). pii: e01180-13.

Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement.
Field N, Cohen T, Struelens MJ, Palm D, Cookson B, Glynn JR, Gallo V, Ramsay M, Sonnenberg P, Maccannell D, Charlett A, Egger M, Green J, Vineis P, Abubakar I. Lancet Infect Dis. 2014 Mar 13. pii: S1473-3099(13)70324-4.

Recombinant viruses initiated the early HIV-1 epidemic in Burkina Faso
Fonjungo PN, Kalish ML, Schaefer A, Rayfield M, Mika J, Rose LE, Heslop O, Soudre R, Pieniazek D. PLoS One. 2014 ;9(3):e92423.

Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.
Forbi JC, Campo DS, Purdy MA, Dimitrova ZE, Skums P, Xia GL, Punkova LT, Ganova-Raeva LM, Vaughan G, Ben-Ayed Y, Switzer WM, Khudyakov YE. J Med Virol. 2014 Feb 12.

Application of a reverse dot blot DNA-DNA hydridization method to quantify host-feeding tendencies of two sibling species in the Anopheles gambiae complex
Fritz ML, Miller JR, Bayoh MN, Vulule JM, Landgraf JR, Walker ED. Med Vet Entomol. 2013 Dec;27(4):398-407.

Multiple reassortment events among highly pathogenic avian influenza A(H5N1) viruses detected in Bangladesh.
Gerloff NA, Khan SU, Balish A, Shanta IS, Simpson N, Berman L, Haider N, Poh MK, Islam A, Gurley E, Hasnat MA, Dey T, Shu B, Emery S, Lindstrom S, Haque A, Klimov A, Villanueva J, Rahman M, Azziz-Baumgartner E, Ziaur Rahman M, Luby SP, Zeidner N, Donis RO, Sturm-Ramirez K, Davis CT. Virology. 2014 Feb;450-451:297-307.

Whole-genome single-nucleotide-polymorphism analysis for discrimination of Clostridium botulinum group I strains
Gonzalez-Escalona N, Timme R, Raphael BH, Zink D, Sharma SK. Appl Environ Microbiol. 2014 Apr;80(7):2125-32.

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study.
Grad YH, Kirkcaldy RD, Trees D, Dordel J, Harris SR, Goldstein E, Weinstock H, Parkhill J, Hanage WP, Bentley S, Lipsitch M. Lancet Infect Dis. 2014 Jan 21. pii: S1473-3099(13)70693-5.

Cancer Screening and Genetics: A Tale of Two Paradigms.
Hamilton JG1, Edwards HM, Khoury MJ, Taplin SH. Cancer Epidemiol Biomarkers Prev. 2014 Apr 4.

Human papillomavirus genotype prevalence in invasive penile cancers from a registry-based United States population
Hernandez BY, Goodman MT, Unger ER, Steinau M, Powers A, Lynch CF, Cozen W, Saber MS, Peters ES, Wilkinson EJ, Copeland G, Hopenhayn C, Huang Y, Watson M, Altekruse SF, Lyu C, Saraiya M. Front Oncol. 2014 ;4:9.

The association between demographic and behavioral characteristics and sunburn among U.S. adults - National Health Interview Survey, 2010.
Holman DM, Berkowitz Z, Guy GP Jr, Hartman AM, Perna FM. Prev Med. 2014 Feb 28. pii: S0091-7435(14)00083-8.

Evaluation of automated and manual DNA purification methods for detecting Ricinus communis DNA during ricin investigations
Hutchins AS, Astwood MJ, Saah JR, Michel PA, Newton BR, Dauphin LA. Forensic Sci Int. 2014 Mar;236C:10-15.

Scientific reporting is suboptimal for aspects that characterize genetic risk prediction studies: a review of published articles based on the Genetic RIsk Prediction Studies statement.
Iglesias AI, Mihaescu R, Ioannidis JP, Khoury MJ, Little J, van Duijn CM, Janssens AC. J Clin Epidemiol. 2014 Jan 7

Increasing value and reducing waste in research design, conduct, and analysis.
John P A Ioannidis, Sander Greenland, Muin J Khoury, Malcolm R Macleod, David Moher, Kenneth F Schulz, Robert Tibshirani Lancet. 2014 Jan 11;383(9912):166-75.

Characterization of reverse genetics-derived cold-adapted master donor virus A/Leningrad/134/17/57 (H2N2) and reassortants with H5N1 surface genes in a mouse model
Isakova-Sivak I, Chen LM, Bourgeois M, Matsuoka Y, Voeten JT, Heldens JG, van den Bosch H, Klimov A, Rudenko L, Cox NJ, Donis RO. Clin Vaccine Immunol. 2014 Mar 19.

Frequency of prenatal cytogenetic diagnosis and pregnancy outcomes by maternal race-ethnicity, and the effect on the prevalence of trisomy 21, Metropolitan Atlanta, 1996-2005
Jackson JM, Crider KS, Cragan JD, Rasmussen SA, Olney RS. Am J Med Genet A. 2014 Jan;164(1):70-6.

Maternal smoking, xenobiotic metabolizing enzyme gene variants, and gastroschisis risk
Jenkins MM, Reefhuis J, Gallagher ML, Mulle JG, Hoffmann TJ, Koontz DA, Sturchio C, Rasmussen SA, Witte JS, Richter P, Honein MA. Am J Med Genet A. 2014 Mar 25.

Prothrombin G20210A mutation is associated with young-onset stroke: the Genetics of Early-Onset Stroke Study and Meta-Analysis
Jiang B, Ryan KA, Hamedani A, Cheng Y, Sparks MJ, Koontz D, Bean CJ, Gallagher M, Hooper WC, McArdle PF, O'Connell JR, Stine OC, Wozniak MA, Stern BJ, Mitchell BD, Kittner SJ, Cole JW. Stroke. 2014 Mar 11.

Visual endpoint detection of Escherichia coli O157:H7 using isothermal Genome Exponential Amplification Reaction (GEAR) assay and malachite green
Jothikumar P, Narayanan J, Hill V. J Microbiol Methods. 2014 Jan 11.

Deletion of the NSm virulence gene of Rift Valley fever virus inhibits virus replication in and dissemination from the midgut of Aedes aegypti mosquitoes
Kading RC, Crabtree MB, Bird BH, Nichol ST, Erickson BR, Horiuchi K, Biggerstaff BJ, Miller BR. PLoS Negl Trop Dis. 2014 Feb;8(2):e2670.

Development of a Genomic DNA Reference Material Panel for Rett Syndrome (MECP2-Related Disorders) Genetic Testing.
Kalman LV, Tarleton JC, Percy AK, Aradhya S, Bale S, Barker SD, Bayrak-Toydemir P, Bridges C, Buller-Burckle AM, Das S, Iyer RK, Vo TD, Zvereff VV, Toji LH. J Mol Diagn. 2014 Feb 1. pii: S1525-1578(13)00258-4.

Multilocus sequence typing of Enterocytozoon bieneusi in nonhuman primates in China.
Karim MR, Wang R, He X, Zhang L, Li J, Rume FI, Dong H, Qi M, Jian F, Zhang S, Sun M, Yang G, Zou F, Ning C, Xiao L. Vet Parasitol. 2013 Dec 14.

Q&A: Muin Khoury on cancer epidemiology.
Khoury MJ, Rose S. Cancer Discov. 2014 Feb;4(2):140.

Comparative review of Francisella tularensis and Francisella novicida.
Kingry LC, Petersen JMFront Cell Infect Microbiol. 2014 Mar 13;4:35.

Rotavirus G and P types circulating in the eastern region of Kenya: predominance of G9 and emergence of G12 genotypes
Kiulia NM, Nyaga MM, Seheri ML, Wolfaardt M, van Zyl WB, Esona MD, Irimu G, Inoti M, Gatinu BW, Njenga PK, Taylor MB, Nyachieo A. Pediatr Infect Dis J. 2014 Jan;33 Suppl 1:S85-8.

Population genetic and admixture analyses of Culex pipiens complex (Diptera: Culicidae) populations in California, United States
Kothera L, Nelms BM, Reisen WK, Savage HM. Am J Trop Med Hyg. 2013 Dec;89(6):1154-67.

Prevalence of sequence types among clinical and environmental isolates of Legionella pneumophila serogroup 1 in the United States from 1982 to 2012
Kozak-Muiznieks NA, Lucas CE, Brown E, Pondo T, Taylor TH Jr, Frace M, Miskowski D, Winchell JM. J Clin Microbiol 2014; 52(1):201-211.

Total body skin examination for skin cancer screening among U.S. adults from 2000 to 2010.
Lakhani NA, Saraiya M, Thompson TD, King SC, Guy GP Jr. Prev Med. 2014 Jan 10. pii: S0091-7435(14)00020-6.

Genetic host specificity of hepatitis E virus
Lara J, Purdy MA, Khudyakov YE. Infect Genet Evol. 2014 Mar 22.

Mutation analysis of a cohort of US patients with hemophilia B
Li T, Miller CH, Driggers J, Payne AB, Ellingsen D, Hooper WC. Am J Hematol. 2013 Dec 4.

Evolution and structural organization of the C proteins of paramyxovirinae
Lo MK, Sogaard TM, Karlin DG. PLoS One. 2014 ;9(2):e90003.

Genetic variation and recurrent parasitaemia in Peruvian Plasmodium vivax populations
McCollum AM, Soberon V, Salas CJ, Santolalla ML, Udhayakumar V, Escalante AA, Graf PC, Durand S, Cabezas C, Bacon DJ. Malar J. 2014 ;13(1):67.

Relationship between level of hepatitis B virus DNA and liver disease: a population-based study of hepatitis B e antigen-negative persons with hepatitis B
McMahon BJ, Bulkow L, Simons B, Zhang Y, Negus S, Homan C, Spradling P, Teshale E, Lau D, Snowball M, Livingston SE. Clin Gastroenterol Hepatol. 2014 Apr;12(4):701-706.e3.

Urine-based human papillomavirus DNA testing as a screening tool for cervical cancer in high-risk women
Mendez K, Romaguera J, Ortiz AP, Lopez M, Steinau M, Unger ER. Int J Gynaecol Obstet. 2014 Feb;124(2):151-5.

Full-Genome Sequence of a Rare Human G3P[9] Rotavirus Strain.
Mijatovic-Rustempasic S, Roy S, Sturgeon M, Rungsrisuriyachai K, Esona MD, Degroat D, Qin X, Cortese MM, Bowen MD. Genome Announc. 2014 Mar 27;2(2). pii: e00143-14.

Genetic analysis of G12P[8] rotaviruses detected in the largest U.S. G12 genotype outbreak on record
Mijatovic-Rustempasic S, Teel EN, Kerin TK, Hull JJ, Roy S, Weinberg GA, Payne DC, Parashar UD, Gentsch JR, Bowen MD. Infect Genet Evol. 2013 Nov 21;21c:214-219.

High prevalence and two dominant host-specific genotypes of Coxiella burnetii in U.S. milk
Pearson T, Hornstra HM, Hilsabeck R, Gates LT, Olivas SM, Birdsell DM, Hall CM, German S, Cook JM, Seymour ML, Priestley RA, Kondas AV, Clark Friedman CL, Price EP, Schupp JM, Liu CM, Price LB, Massung RF, Kersh GJ, Keim P. BMC Microbiol. 2014 ;14(1):41.

A public health economic assessment of hospitals' cost to screen newborns for critical congenital heart disease.
Peterson C, Grosse SD, Glidewell J, Garg LF, Van Naarden Braun K, Knapp MM, Beres LM, Hinton CF, Olney RS, Cassell CH. Public Health Rep. 2014 Jan;129(1):86-93.

Molecular surveillance of rotavirus infection in the democratic republic of the Congo August 2009 to June 2012.
Pukuta ES, Esona MD, Nkongolo A, Seheri M, Makasi M, Nyembwe M, Mondonge V, Dahl BA, Mphahlele MJ, Cavallaro K, Gentsch J, Bowen MD, Waku-Kouomou D, Muyembe JJ; SURVAC Working Group. Pediatr Infect Dis J. 2014 Apr;33(4):355-9.

Characterization of Clostridium botulinum strains producing BoNT/F4 or BoNT/F5.
Raphael BH, Bradshaw M, Kalb SR, Joseph LA, Lúquez C, Barr JR, Johnson EA, Maslanka SE. Appl Environ Microbiol. 2014 Mar 14.

Using Mitochondrial Genome Sequences to Track the Origin of Imported Plasmodium vivax Infections Diagnosed in the United States.
Rodrigues PT, Alves JM, Santamaria AM, Calzada JE, Xayavong M, Parise M, da Silva AJ, Ferreira MU. Am J Trop Med Hyg. 2014 Mar 17.

Criteria for fairly allocating scarce health-care resources to genetic tests: which matter most?
Rogowski WH, Grosse SD, Schmidtke J, Marckmann G. Eur J Hum Genet. 2014 Jan;22(1):25-31.

Robust regression analysis of copy number variation data based on a univariate score.
Satten GA, Allen AS, Ikeda M, Mulle JG, Warren ST. PLoS One. 2014 Feb 7;9(2):e86272.

Development of a loop-mediated isothermal amplification method for detection of histoplasma capsulatum DNA in clinical samples.
Scheel CM, Zhou Y, Theodoro RC, Abrams B, Balajee SA, Litvintseva AP. J Clin Microbiol. 2014 Feb;52(2):483-8.

A cancer genetics toolkit improves access to genetic services through documentation and use of the family history by primary-care clinicians
Scheuner MT, Hamilton AB, Peredo J, Sale TJ, Austin C, Gilman SC, Bowen MS, Goldzweig CL, Lee M, Mittman BS, Yano EM. Genet Med. 2014 Jan;16(1):60-9.

Collaborative biomedicine in the age of big data: the case of cancer.
Shaikh AR, Butte AJ, Schully SD, Dalton WS, Khoury MJ, Hesse BW. J Med Internet Res. 2014 Apr 7;16(4):e101.

Rapid strategy for screening by pyrosequencing of influenza virus reassortants - candidates for live attenuated vaccines.
Shcherbik SV, Pearce NC, Levine ML, Klimov AI, Villanueva JM, Bousse TLPLoS One. 2014 Mar 19;9(3):e92580.

Application of real time RT-PCR for the genetic homogeneity and stability tests of the seed candidates for live attenuated influenza vaccine production
Shcherbik S, Sergent SB, Davis WG, Shu B, Barnes J, Kiseleva I, Larionova N, Klimov A, Bousse T. J Virol Methods. 2014 Jan;195:18-25.

LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins.
Shepard SS, Davis CT, Bahl J, Rivailler P, York IA, Donis RO. PLoS One. 2014 Jan 23;9(1):e86921

Molecular epidemiology of silent introduction and sustained transmission of wild poliovirus type 1, Israel, 2013
Shulman L, Gavrilin E, Jorba J, Martin J, Burns C, Manor Y, Moran-Gilad J, Sofer D, Hindiyeh M, Gamzu R, Mendelson E, Grotto I. Euro Surveill. 2014 ;19(7).

Molecular Analysis of Chloroquine and Sulfadoxine-Pyrimethamine Resistance-Associated Alleles in Plasmodium falciparum Isolates from Nicaragua.
Sridaran S, Rodriguez B, Mercedes Soto A, Macedo De Oliveira A, Udhayakumar V. Am J Trop Med Hyg. 2014 Mar 10.

Full-length genome characterization and genetic relatedness analysis of hepatitis A virus outbreak strains associated with acute liver failure among children
Vaughan G, Forbi JC, Xia GL, Fonseca-Ford M, Vazquez R, Khudyakov YE, Montiel S, Waterman S, Alpuche C, Goncalves Rossi LM, Luna N. J Med Virol. 2014 Feb;86(2):202-8.

Genotypic and epidemiologic trends of norovirus outbreaks in the United States, 2009 to 2013
Vega E, Barclay L, Gregoricus N, Shirley SH, Lee D, Vinjé J. J Clin Microbiol. 2014 Jan;52(1):147-55.

Cryptosporidium parvum IId family: clonal population and dispersal from Western Asia to other geographical regions
Wang R, Zhang L, Axen C, Bjorkman C, Jian F, Amer S, Liu A, Feng Y, Li G, Lv C, Zhao Z, Qi M, Dong H, Wang H, Sun Y, Ning C, Xiao L. Sci Rep. 2014 ;4:4208.

Allele-specific qRT-PCR demonstrates superior detection of single nucleotide polymorphisms as genetic markers for West Nile virus compared to Luminex((R)) and quantitative sequencing
Worwa G, Andrade CC, Thiemann TC, Park B, Maharaj PD, Anishchenko M, Brault AC, Reisen WK. J Virol Methods. 2014 Jan;195:76-85.

Real-time PCR assays for detection of Brucella spp. and the identification of genotype ST27 in bottlenose dolphins (Tursiops truncatus).
Wu Q, McFee WE, Goldstein T, Tiller RV, Schwacke L.  J Microbiol Methods. 2014 Mar 13. pii: S0167-7012(14)00073-6.

Concordance between molecular and phenotypic testing of Mycobacterium tuberculosis complex isolates for resistance to rifampin and isoniazid in the United States.
Yakrus MA, Driscoll J, Lentz AJ, Sikes D, Hartline D, Metchock B, Starks AM. J Clin Microbiol. 2014 Mar 19.

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