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Genomics & Health Impact Update

The Office of Public Health Genomics (OPHG) provides updated and credible information on how genomic information and family health history can improve health and influence policy and practice.


CDC-Authored Publications 2012

 

Genetic characterization of Cryptosporidium spp. in diarrhoeic children from four provinces in South Africa
Abu Samra N, Thompson PN, Jori F, Frean J, Poonsamy B, du Plessis D, Mogoye B, Xiao L. Zoonoses Public Health. 2012 Jun 20.

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including Shiga toxin encoding phage stx2
Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS. PLoS One. 2012 ;7(11):e48228.

Molecular characterization of diarrheagenic Escherichia coli from Libya
Ali MM, Mohamed ZK, Klena JD, Ahmed SF, Moussa TA, Ghenghesh KS. Am J Trop Med Hyg. 2012 May;86(5):866-71.

Age-associated DNA methylation in pediatric populations
Alisch RS, Barwick BG, Chopra P, Myrick LK, Satten GA, Conneely KN, Warren ST. Genome Res. 2012 Apr;22(4):623-32.

Using routinely reported tuberculosis genotyping and surveillance data to predict tuberculosis outbreaks
Althomsons SP, Kammerer JS, Shang N, Navin TR. PLoS One. 2012 ;7(11):e48754.

Recommendations for publication of viral genetic data and sample access for novel viruses and strains
Arrigo NC, Briese T, Calisher CH, Drebot MA, Hjelle B, Leduc JW, Powers AM, Repik PM, Roehrig JT, Schmaljohn CS, Tesh RB, Weaver SC. Am J Trop Med Hyg. 2012 Feb;86(2):189-191.

Existence of the Rdl mutant alleles among the Anopheles malaria vector in Indonesia
Asih PB, Syahrani L, Rozi IE, Pratama NR, Marantina SS, Arsyad DS, Mangunwardoyo W, Hawley W, Laihad F, Shinta S, Sukowati S, Lobo NF, Syafruddin D. Malar J. 2012 Feb 25;11(1):57.

Looking back at genomic medicine in 2011
Auffray C, Caulfield T, Khoury MJ, Lupski JR, Schwab M, Veenstra T. Genome Med. 2012 Jan 30;4(1):9.

Single nucleotide polymorphism in the promoter region of the CD209 gene is associated with human predisposition to severe forms of tick-borne encephalitis
Barkhash AV, Perelygin AA, Babenko VN, Brinton MA, Voevoda MI. Antiviral Res. 2012 Jan;93(1):64-8.

Multistate outbreak of MDR TB identified by genotype cluster investigation
Barry PM, Gardner TJ, Funk E, Oren E, Field K, Shaw T, Langer AJ. Emerg Infect Dis. 2012 Jan;18(1):113-6.

Molecular epidemiology of influenza A(H1N1)pdm09 viruses from Pakistan in 2009-2010
Bashir Aamir U, Badar N, Mehmood MR, Nisar N, Suleman RM, Shaukat S, Sharif S, Kamran J, Zaidi SS, Kazi BM, Gubareva L, Xu X, Garten R, Klimov A.
PLoS One. 2012 ;7(8):e41866.

A hybrid approach for the automated finishing of bacterial genomes
Bashir A, Klammer AA, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, Lamay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE. Nat Biotechnol. 2012 Jul 1.

Evaluation for West Nile Virus (WNV) RNA in urine of patients within 5 months of WNV infection
Baty SA, Gibney KB, Staples JE, Patterson AB, Levy C, Lehman J, Wadleigh T, Feld J, Lanciotti R, Nugent CT, Fischer M. J Infect Dis. 2012 May;205(9):1476-7.

Heme oxygenase-1 gene promoter polymorphism is associated with reduced incidence of acute chest syndrome among children with sickle cell disease
Bean CJ, Boulet SL, Ellingsen D, Pyle ME, Barron-Casella EA, Casella JF, Payne AB, Driggers J, Trau HA, Yang G, Jones K, Ofori-Acquah SF, Hooper WC, Debaun MR. Blood. 2012 Sep 10.

Increased risk of venous thromboembolism is associated with genetic variation in heme oxygenase-1 in Blacks
Bean CJ, Boulet SL, Ellingsen D, Trau H, Ghaji N, Hooper WC, Austin H. Thromb Res. 2012 Sep 6.

Survey and genetic characterization of wastewater in Tunisia for Cryptosporidium spp., Giardia duodenalis, Enterocytozoon bieneusi, Cyclospora cayetanensis and Eimeria spp
Ben Ayed L, Yang W, Widmer G, Cama V, Ortega Y, Xiao L. J Water Health. 2012 Sep;10(3):431-44.

Clinical application of a multiplex real-time PCR assay for simultaneous detection of Legionella species, Legionella pneumophila and Legionella pneumophila serogroup 1
Benitez AJ, Winchell JM. J Clin Microbiol. 2012 Nov 7.

Multi-locus variable-number tandem-repeat analysis of Mycoplasma pneumoniae clinical isolates from 1962-present: a retrospective studyDescription: External Web Site Icon
Benitez AJ, Diaz MH, Wolff BJ, Pimentel G, Njenga MK, Estevez A, Winchell JM.
J Clin Microbiol. 2012 Sep 5.

Reverse genetics recovery of Lujo virus and role of virus RNA secondary structures in efficient virus growth
Bergeron E, Chakrabarti AK, Bird BH, Dodd KA, McMullan LK, Spiropoulou CF, Nichol ST, Albarino CG. J Virol. 2012 Jul 25.

Health care needs of children with Tourette syndrome
Bitsko RH, Danielson M, King M, Visser SN, Scahill L, Perou R.
J Child Neurol. 2012 Nov 8.

Rapid, simultaneous detection of Clostridium sordellii and Clostridium perfringens in archived tissues by a novel PCR-based microsphere assay: diagnostic implications for pregnancy-associated toxic shock syndrome cases
Bhatnagar J, Deleon-Carnes M, Kellar KL, Bandyopadhyay K, Antoniadou ZA, Shieh WJ, Paddock CD, Zaki SR. Infect Dis Obstet Gynecol. 2012 ;2012:972845.

Analysis of a non-structural gene reveals evidence of possible hepatitis C virus (HCV) compartmentalization
Blackard JT, Ma G, Welge JA, Martin CM, Sherman KE, Taylor LE, Mayer KH, Jamieson DJ. J Med Virol. 2012 February;84(2):242-252.

Recommendations and proposed guidelines for assessing the cumulative evidence on joint effects of genes and environments on cancer occurrence in humans
Boffetta P, Winn DM, Ioannidis JP, Thomas DC, Little J, Davey Smith G, Cogliano VJ, Hecht SS, Seminara D, Vineis P, Khoury MJ. Int J Epidemiol. 2012 May 16.

Single cell gel electrophoresis assay (comet assay) for evaluating nanoparticles-induced DNA damage in cells
Bowman L, Castranova V, Ding M. Methods Mol Biol. 2012 ;906:415-22.

Public health action in genomics is now needed beyond newborn screening
Bowen MS, Kolor K, Dotson WD, Ned RM, Khoury MJ. Public Health Genomics. 2012 Sep 11.

Japanese encephalitis virus genotype replacement, Taiwan, 2009-2010
Chen YY, Fan YC, Tu WC, Chang RY, Shih CC, Lu IH, Chien MS, Lee WC, Chen TH, Chang GJ, Chiou SS. Emerg Infect Dis. 2011 Dec;17(12):2354-6.

Mutation analysis of the cross-reactive epitopes of Japanese encephalitis virus envelope glycoprotein
Chiou SS, Fan YC, Crill WD, Chang RY, Chang GJ. J Gen Virol. 2012 Jun;93(Pt 6):1185-92.

Molecular signatures associated with Mx1-mediated resistance to highly pathogenic influenza virus infection: mechanisms of survival
Cilloniz C, Pantin-Jackwood MJ, Ni C, Carter VS, Korth MJ, Swayne DE, Tumpey TM, Katze MG. J Virol. 2012 Mar;86(5):2437-46.

Antiviral activity of nucleoside analogues against norovirus
Costantini VP, Whitaker T, Barclay L, Lee D, McBrayer TR, Schinazi RF, Vinje J. Antivir Ther. 2012 Aug 14.

CFTR mutation analysis and haplotype associations in CF patients
Cordovado SK, Hendrix M, Greene CN, Mochal S, Earley MC, Farrell PM, Kharrazi M, Hannon WH, Mueller PW. Mol Genet Metab. 2012 Feb;105(2):249-54.

Genotypic characterization of Streptococcus infantarius subsp. coli isolates from sea otters with infective endocarditis and/or septicemia and from environmental mussel samples
Counihan-Edgar KL, Gill VA, Doroff AM, Burek KA, Miller WA, Shewmaker PL, Jang S, Goertz CE, Tuomi PA, Miller MA, Jessup DA, Byrne BA.
J Clin Microbiol. 2012 Dec;50(12):4131-3.

The 3' untranslated regions of influenza genomic sequences are 5'PPP-independent ligands for RIG-I
Davis WG, Bowzard JB, Sharma SD, Wiens ME, Ranjan P, Gangappa S, Stuchlik O, Pohl J, Donis RO, Katz JM, Cameron CE, Fujita T, Sambhara S. PLoS One. 2012 ;7(3):e32661.

Severe outcomes are associated with genogroup 2 genotype 4 norovirus outbreaks: a systematic literature review
Desai R, Hembree CD, Handel A, Matthews JE, Dickey BW, McDonald S, Hall AJ, Parashar UD, Leon JS, Lopman B. Clin Infect Dis. 2012 Apr 4.

Neuraminidase H275Y and hemagglutinin D222G mutations in a fatal case of 2009 pandemic influenza A (H1N1) virus infection
Devries A, Wotton J, Lees C, Boxrud D, Uyeki T, Lynfield R. Influenza Other Respi Viruses. 2012 Jan 14.

Development of a novel genus-specific real-time PCR assay for detection and differentiation of Bartonella species and genotypes
Diaz MH, Bai Y, Malania L, Winchell JM, Kosoy MY. J Clin Microbiol. 2012 Feb 29.

Comparison of HIV-1 resistance profiles in plasma RNA versus PBMC DNA in heavily treated patients in Honduras, a resource-limited country
Diallo K, Murillo WE, de Rivera IL, Albert J, Zhou Z, Nkengasong J, Zhang G, Sabatier JF, Yang C. Int J Mol Epidemiol Genet. 2012 ;3(1):56-65.

Luciferase reporter system for studying the effect of nanoparticles on gene expression
Ding M, Bowman L, Castranova V. Methods Mol Biol. 2012 ;906:403-14.

Genetic diversity and antibiotic resistance in Shigella dysenteriae and Shigella boydii strains isolated from children aged <5 years in Egypt
El-Gendy AM, Mansour A, Weiner MA, Pimentel G, Armstrong AW, Young SY, Elsayed N, Klena JD. Epidemiol Infect. 2012 Feb;140(2):299-310.

A permutation procedure to correct for confounders in case-control studies, including tests of rare variation
Epstein MP, Duncan R, Jiang Y, Conneely KN, Allen AS, Satten GA. Am J Hum Genet. 2012 Aug 10;91(2):215-23.

Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011
Etienne KA, Gillece J, Hilsabeck R, Schupp JM, Colman R, Lockhart SR, Gade L, Thompson EH, Sutton DA, Neblett-Fanfair R, Park BJ, Turabelidze G, Keim P, Brandt ME, Deak E, Engelthaler DM. PLoS One. 2012 ;7(11):e49989.

Nocardia amikacinitolerans sp. nov., an amikacin-resistant human pathogen
Ezeoke I, Klenk HP, Potter G, Schumann P, Moser BD, Lasker BA, Nicholson A, Brown JM. Int J Syst Evol Microbiol. 2012 Jun 15.

Cancer in children with nonchromosomal birth defects
Fisher PG, Reynolds P, Von Behren J, Carmichael SL, Rasmussen SA, Shaw GM. J Pediatr. 2012 Jun;160(6):978-83.

Genomic analysis of emm59 group A Streptococcus invasive strains, United States [PDF 221.09 KB]
Fittipaldi N, Olsen RJ, Beres SB, Van Beneden C, Musser JM. Emerg Infect Dis. 2012 ;18(4):650-652.

Assessing the influence of 5,10-methylenetetrahydrofolate reductase polymorphism on folate stability during long-term frozen storage, thawing, and repeated freeze/thawing of whole blood
Fazili Z, Sternberg MR, Pfeiffer CM. Clin Chim Acta. 2012 Jun 14;413(11-12):966-72.

Characterization of multi-drug resistant Salmonella enterica serovar Heidelberg from a ground turkey-associated outbreak in the United States, 2011
Folster JP, Pecic G, Rickert R, Taylor J, Zhao S, Fedorka-Cray PL, Whichard J, McDermott P. Antimicrob Agents Chemother. 2012 Mar 26.

Epidemic history of hepatitis C virus infection in two remote communities in Nigeria, West Africa
Forbi JC, Purdy MA, Campo DS, Vaughan G, Dimitrova ZE, Ganova-Raeva LM, Xia GL, Khudyakov YE. J Gen Virol. 2012 Mar 28.

Relevance, pathogenesis, and testing algorithm for mismatch repair-defective colorectal carcinomas: a report of the association for molecular pathology.
Funkhouser WK Jr, Lubin IM, Monzon FA, Zehnbauer BA, Evans JP, Ogino S, Nowak JA. J Mol Diagn. 2012 Mar;14(2):91-103.

Monitoring HPV type-specific prevalence over time through clinic-based surveillance: a perspective on vaccine effectiveness
Gaffga NH, Flagg EW, Weinstock HS, Shlay JC, Ghanem KG, Koutsky LA, Kerndt PR, Hsu KK, Unger ER, Datta SD. Vaccine. 2012 Jan 17.

Deletion of specific immune-modulatory genes from modified vaccinia virus ankara-based HIV vaccines engenders improved immunogenicity in rhesus macaques
Garber DA, O'Mara LA, Gangadhara S, McQuoid M, Zhang X, Zheng R, Gill K, Verma M, Yu T, Johnson B, Li B, Derdeyn CA, Ibegbu C, Altman JD, Hunter E, Feinberg MB. J Virol. 2012 Dec;86(23):12605-15.

Assuring the quality of next-generation sequencing in clinical laboratory practice
Gargis AS, Kalman L, Berry MW, Bick DP, Dimmock DP, Hambuch T, Lu F, Lyon E, Voelkerding KV, Zehnbauer BA, Agarwala R, Bennett SF, Chen B, Chin EL, Compton JG, Das S, Farkas DH, Ferber MJ, Funke BH, Furtado MR, Ganova-Raeva LM, Geigenmuller U, Gunselman SJ, Hegde MR, Johnson PL, Kasarskis A, Kulkarni S, Lenk T, Liu CS, Manion M, Manolio TA, Mardis ER, Merker JD, Rajeevan MS, Reese MG, Rehm HL, Simen BB, Yeakley JM, Zook JM, Lubin IM. Nat Biotechnol. 2012 Nov;30(11):1033-6.

Developmental genetics of secretory vesicle acidification during Caenorhabditis elegans spermatogenesis
Gleason EJ, Hartley PD, Henderson M, Hill-Harfe KL, Price PW, Weimer RM, Kroft TL, Zhu GD, Cordovado S, L'Hernault S W. Genetics. 2012 Jun;191(2):477-91.

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event
Golubchik T, Brueggemann AB, Street T, Gertz RE, Spencer CC, Ho T, Giannoulatou E, Link-Gelles R, Harding RM, Beall B, Peto TE, Moore MR, Donnelly P, Crook DW, Bowden R. Nat Genet. 2012 ;44(3):352-5.

F8 gene mutation type and inhibitor development in patients with severe hemophilia A: systematic review and meta-analysis
Gouw SC, van den Berg HM, Oldenburg J, Astermark J, de Groot PG, Margaglione M, Thompson AR, van Heerde W, Boekhorst J, Miller CH, le Cessie S, van der Bom JG. Blood. 2012 Mar 22;119(12):2922-34.

Race-ethnic differences in the association of genetic loci with HbA1c levels and mortality in U.S. adults: the third National Health and Nutrition Examination Survey (NHANES III).
Grimsby JL, Porneala BC, Vassy JL, Yang Q, Florez JC, Dupuis J, Liu T, Yesupriya A, Chang MH, Ned RM, Dowling NF, Khoury MJ, Meigs JB, Magic Investigators T. BMC Med Genet. 2012 Apr 27;13(1):30.

The Jamaican historical experience of the impact of educational interventions on sickle cell disease child mortality
Grosse SD, Atrash HK, Odame I, Amendah D, Piel FB, Williams TN. Am J Prev Med. 2012 Jun;42(6):e101-3.

Identification of diverse Bartonella genotypes among small mammals from Democratic Republic of Congo and Tanzania
Gundi VA, Kosoy MY, Makundi RH, Laudisoit A. Am J Trop Med Hyg. 2012 Aug;87(2):319-26.

Multiwalled carbon nanotube-induced gene signatures in the mouse lung: potential predictive value for human lung cancer risk and prognosis
Guo NL, Wan YW, Denvir J, Porter DW, Pacurari M, Wolfarth MG, Castranova V, Qian Y.
J Toxicol Environ Health A. 2012 Sep 15;75(18):1129-53.

The association of variants in the FTO gene with longitudinal body mass index profiles in non-Hispanic white children and adolescents
Hallman DM, Friedel VC, Eissa MA, Boerwinkle E, Huber JC, Harrist RB, Srinivasan SR, Chen W, Dai S, Labarthe DR, Berenson GS. Int J Obes (Lond). 2012 Jan;36(1):61-8.

Human papillomavirus genotypes in high grade cervical lesions in the United States
Hariri S, Unger ER, Powell SE, Bauer HM, Bennett NM, Bloch KC, Niccolai LM, Schafer S, Steinau M, Markowitz LE. J Infect Dis. 2012 Oct 8.

Ethnicity interacts with the OPRM1 gene in experimental pain sensitivity
Hastie BA, Riley JL, Kaplan L, Herrera DG, Campbell CM, Virtusio K, Mogil JS, Wallace MR, Fillingim RB. Pain. 2012 Aug;153(8):1610-9.

Improved analysis of C26:0-lysophosphatidylcholine in dried-blood spots via negative ion mode HPLC-ESI-MS/MS for X-linked adrenoleukodystrophy newborn screening
Haynes CA, De Jesus VR. Clin Chim Acta. 2012 Aug 16;413(15-16):1217-21.

Prenatal exposure to polycyclic aromatic hydrocarbons, benzo[a]pyrene-DNA adducts, and genomic DNA methylation in cord blood
Herbstman JB, Tang D, Zhu D, Qu L, Sjodin A, Li Z, Camann D, Perera FP. Environ Health Perspect. 2012 May;120(5):733-8.

Implications of Internet availability of genomic information for public health practice
Hesse BW, Arora NK, Khoury MJ. Public Health Genomics. 2012 ;15(3-4):201-8.

Improving newborn screening follow-up in pediatric practices: quality improvement innovation network
Hinton CF, Neuspiel DR, Gubernick RS, Geleske T, Healy J, Kemper AR, Lloyd-Puryear MA, Saul RA, Thompson BH, Kaye CI. Pediatrics. 2012 Aug 6.

Detectable clonal mosaicism and its relationship to aging and cancer
Jacobs KB, Yeager M, Zhou W, Wacholder S, Wang Z, Rodriguez-Santiago B, Hutchinson A, Deng X, Liu C, Horner MJ, Cullen M, Epstein CG, Burdett L, Dean MC, Chatterjee N, Sampson J, Chung CC, Kovaks J, Gapstur SM, Stevens VL, Teras LT, Gaudet MM, Albanes D, Weinstein SJ, Virtamo J, Taylor PR, Freedman ND, Abnet CC, Goldstein AM, Hu N, Yu K, Yuan JM, Liao L, Ding T, Qiao YL, Gao YT, Koh WP, Xiang YB, Tang ZZ, Fan JH, Aldrich MC, Amos C, Blot WJ, Bock CH, Gillanders EM, Harris CC, Haiman CA, Henderson BE, Kolonel LN, Le Marchand L, McNeill LH, Rybicki BA, Schwartz AG, Signorello LB, Spitz MR, Wiencke JK, Wrensch M, Wu X, Zanetti KA, Ziegler RG, Figueroa JD, Garcia-Closas M, Malats N, Marenne G, Prokunina-Olsson L, Baris D, Schwenn M, Johnson A, Landi MT, Goldin L, Consonni D, Bertazzi PA, Rotunno M, Rajaraman P, Andersson U, Freeman LE, Berg CD, Buring JE, Butler MA, Carreon T, Feychting M, Ahlbom A, Gaziano JM, Giles GG, Hallmans G, Hankinson SE, Hartge P, Henriksson R, Inskip PD, Johansen C, Landgren A, McKean-Cowdin R, Michaud DS, Melin BS, Peters U, Ruder AM, et al. Nat Genet. 2012 May 6.

Evaluation of a high-throughput diagnostic system for detection of HIV-1 in dried blood spot samples from infants in Mozambique
Jani IV, Sabatier J, Vubil A, Subbarao S, Bila D, de Sousa A, Mabunda N, Garcia A, Skaggs B, Ellenberger D, Ramos A. J Clin Microbiol. 2012 Apr;50(4):1458-60.

Assessment of Rickettsia spp. and R. rickettsii real-time PCR assay performance on banked clinical samples
Kato CY, Chung IH, Robinson LK, Austin AL, Dasch GA, Massung RF. J Clin Microbiol. 2012 Nov 7.

Genetic variants in IGF-I, IGF-II, IGFBP-3, and adiponectin genes and colon cancer risk in African Americans and Whites
Keku TO, Vidal A, Oliver S, Hoyo C, Hall IJ, Omofoye O, McDoom M, Worley K, Galanko J, Sandler RS, Millikan R. Cancer Causes Control. 2012 Jul;23(7):1127-38.

Genetic and anatomic determinants of enzootic Venezuelan equine encephalitis virus infection of Culex (Melanoconion) taeniopus
Kenney JL, Adams AP, Gorchakov R, Leal G, Weaver SC. PLoS Negl Trop Dis. 2012 Apr;6(4):e1606.

Multilevel research and the challenges of implementing genomic medicine
Khoury MJ, Coates RJ, Fennell ML, Glasgow RE, Scheuner MT, Schully SD, Williams MS, Clauser SB. J Natl Cancer Inst Monogr. 2012 ;2012(44):112-20.

Frontiers in cancer epidemiology: a challenge to the research community from the Epidemiology and Genomics Research Program at the National Cancer Institute
Khoury MJ, Freedman AN, Gillanders EM, Harvey CE, Kaefer C, Reid BC, Rogers S, Schully SD, Seminara D, Verma M. Cancer Epidemiol Biomarkers Prev. 2012 Jul;21(7):999-1001.

Increased immunogenicity of avian influenza DNA vaccine delivered to the skin using a microneedle patch
Kim YC, Song JM, Lipatov AS, Choi SO, Lee JW, Donis RO, Compans RW, Kang SM, Prausnitz MR. Eur J Pharm Biopharm. 2012 Jun;81(2):239-47.

Association between adult height, genetic susceptibility and risk of glioma
Kitahara CM, Wang SS, Melin BS, Wang Z, Braganza M, Inskip PD, Albanes D, Andersson U, Beane Freeman LE, Buring JE, Carreon T, Feychting M, Gapstur SM, Gaziano JM, Giles GG, Hallmans G, Hankinson SE, Henriksson R, Hsing AW, Johansen C, Linet MS, McKean-Cowdin R, Michaud DS, Peters U, Purdue MP, Rothman N, Ruder AM, Sesso HD, Severi G, Shu XO, Stevens VL, Visvanathan K, Waters MA, White E, Wolk A, Zeleniuch-Jacquotte A, Zheng W, Hoover R, Fraumeni JF, Chatterjee N, Yeager M, Chanock SJ, Hartge P, Rajaraman P. Int J Epidemiol. 2012 Aug;41(4):1075-1085.

Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011
Kitikoon P, Vincent AL, Gauger PC, Schlink SN, Bayles DO, Gramer MR, Darnell D, Webby RJ, Lager KM, Swenson SL, Klimov A. J Virol. 2012 Jun;86(12):6804-14.

WHO recommendations for the viruses to be used in the 2012 Southern Hemisphere influenza vaccine: epidemiology, antigenic and genetic characteristics of influenza A(H1N1)pdm09, A(H3N2) and B influenza viruses collected from February to September 2011
Klimov AI, Garten R, Russell C, Barr IG, Besselaar TG, Daniels R, Engelhardt OG, Grohmann G, Itamura S, Kelso A, McCauley J, Odagiri T, Smith D, Tashiro M, Xu X, Webby R, Wang D, Ye Z, Yuelong S, Zhang W, Cox N. Vaccine. 2012 Oct 5;30(45):6461-71.

Public awareness and use of direct-to-consumer personal genomic tests from four state population-based surveys, and implications for clinical and public health practice
Kolor K, Duquette D, Zlot A, Foland J, Anderson B, Giles R, Wrathall J, Khoury MJ. Genet Med. 2012 Jul 19.

Bartonella bacteria in nature: where does population variability end and a species start?
Kosoy M, Hayman DT, Chan KS. Infect Genet Evol. 2012 Mar 23.

Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities
Kostka JE, Green SJ, Rishishwar L, Prakash O, Katz LS, Marino-Ramirez L, Jordan IK, Munk C, Ivanova N, Mikhailova N, Watson DB, Brown SD, Palumbo AV, Brooks SC. J Bacteriol. 2012 Aug;194(16):4461-2

Genomic characterization of Listeria monocytogenes strains involved in a multistate listeriosis outbreak associated with cantaloupe in US
Laksanalamai P, Joseph LA, Silk BJ, Burall LS, Tarr CL, Gerner-Smidt P, Datta AR. PLoS One. 2012 ;7(7):e42448.

Relaxation of adaptive evolution during the HIV-1 infection owing to reduction of CD4+ T cell counts
Leal E, Casseb J, Hendry M, Busch MP, Diaz RS. PLos One. 2012 ;7(6):e39776.

Influenza virus h5 DNA vaccination is immunogenic by intramuscular and intradermal routes in humans
Ledgerwood JE, Hu Z, Gordon IJ, Yamshchikov G, Enama ME, Plummer S, Bailer R, Pearce MB, Tumpey TM, Koup RA, Mascola JR, Nabel GJ, Graham BS. Clin Vaccine Immunol. 2012 Nov;19(11):1792-7.

Atypical Listeria monocytogenes serotype 4b strains harboring a lineage II-specific gene cassette
Lee S, Ward TJ, Graves LM, Wolf LA, Sperry K, Siletzky RM, Kathariou S. Appl Environ Microbiol. 2012 Feb;78(3):660-7.

Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors
Liguori AP, Warrington SD, Ginther JL, Pearson T, Bowers J, Glass MB, Mayo M, Wuthiekanun V, Engelthaler D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Tuanyok A. PLoS One. 2011 ;6(12):e29323.

Comprehensive Research Synopsis and Systematic Meta-Analyses in Parkinson's Disease Genetics: The PDGene Database.
Lill CM, Roehr JT, McQueen MB, Kavvoura FK, Bagade S, Schjeide BM, Schjeide LM, Meissner E, Zauft U, Allen NC, Liu T, Schilling M, Anderson KJ, Beecham G, Berg D, Biernacka JM, Brice A, Destefano AL, Do CB, Eriksson N, Factor SA, Farrer MJ, Foroud T, Gasser T, Hamza T, Hardy JA, Heutink P, Hill-Burns EM, Klein C, Latourelle JC, Maraganore DM, Martin ER, Martinez M, Myers RH, Nalls MA, Pankratz N, Payami H, Satake W, Scott WK, Sharma M, Singleton AB, Stefansson K, Toda T, Tung JY, Vance J, Wood NW, Zabetian CP; 23andMe, The Genetic Epidemiology of Parkinson's Disease (GEO-PD) Consortium; The International Parkinson's Disease Genomics Consortium (IPDGC); The Parkinson's Disease GWAS Consortium; The Wellcome Trust Case Control Consortium 2 (WTCCC2), Young P, Tanzi RE, Khoury MJ, Zipp F, Lehrach H, Ioannidis JP, Bertram L. PLoS Genet. 2012 Mar;8(3):e1002548.

Influence of HLA-DRB1 and HLA-DQB1 alleles on IgG antibody response to the P. vivax MSP-1, MSP-3alpha and MSP-9 in individuals from Brazilian endemic area
Lima-Junior JC, Rodrigues-da-Silva RN, Banic DM, Jiang J, Singh B, Fabricio-Silva GM, Porto LC, Meyer EV, Moreno A, Rodrigues MM, Barnwell JW, Galinski MR, de Oliveira-Ferreira J. PLoS One. 2012 ;7(5):e36419.

Serotypes and genetic profiles of Bordetella pertussis strains isolated in the city of Sao Paulo, 2006-2008
Leite D, Cassiday PK, Tatti KM, Vaz TM, Tondella ML. J Pediatr (Rio J). 2012 Jul-Aug;88(4):357-60.

Trimethyltin-induced neurotoxicity: gene expression pathway analysis, q-RT-PCR and immunoblotting reveal early effects associated with hippocampal damage and gliosis
Little AR, Miller DB, Li S, Kashon ML, O'Callaghan JP. Neurotoxicol Teratol. 2012 Jan;34(1):72-82.

Molecular surveillance of Cryptosporidium spp., Giardia duodenalis, and Enterocytozoon bieneusi by genotyping and subtyping parasites in wastewater
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Distinct and overlapping roles of Nipah virus P gene products in modulating the human endothelial cell antiviral response
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A new single-step PCR assay for the detection of the zoonotic malaria parasite Plasmodium knowlesi
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Genetic diversity among Clostridium botulinum strains harboring bont/A2 and bont/A3 genes
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Diversity and relationships of cocirculating modern human rotaviruses revealed using large-scale comparative genomics
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New insights into fluoroquinolone resistance in Mycobacterium tuberculosis: functional genetic analysis of gyrA and gyrB mutations
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Pertussis pseudo-outbreak linked to specimens contaminated by Bordetella pertussis DNA from clinic surfaces
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Genetic characterization of atypical Mansonella (Mansonella) ozzardi microfilariae in human blood samples from northeastern Peru
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Complete genome sequence of Ikoma lyssavirus
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Evaluation of blood collection filter papers for HIV-1 DNA PCR
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Concurrent serotyping and genotyping of pneumococci by use of PCR and electrospray ionization mass spectrometry
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Molecular dissection of an outbreak of carbapenem-resistant enterobacteriaceae reveals intergenus KPC carbapenemase transmission through a promiscuous plasmid
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Epidemiology of Enterocytozoon bieneusi infection in humans
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Introduction to the 4th National Conference on Genomics and Public Health
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Host mTORC1 signaling regulates Andes virus replication
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Neonatal screening for lysosomal storage disorders: feasibility and incidence from a nationwide study in Austria
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Known glioma risk loci are associated with glioma with a family history of brain tumours - a case-control gene association study
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Evidence-based path to newborn screening for Duchenne muscular dystrophy
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Personalized medicine in major depressive disorder - opportunities and pitfalls
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A genome-wide association study of total bilirubin and cholelithiasis risk in sickle cell anemia
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Genetic diversity of HA1 domain of hemagglutinin gene of pandemic influenza H1N1pdm09 viruses in New Delhi, India
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Use of tuberculosis genotyping for postoutbreak monitoring
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Permanent genetic resources added to Molecular Ecology Resources Database 1 October 2011 - 30 November 2011External Web Site Icon
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Using genotyping and geospatial scanning to estimate recent Mycobacterium tuberculosis transmission, United States
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Estimating the contribution of genetic variants to difference in incidence of disease between population groups
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Global distribution and genetic diversity of Bartonella in bat flies (Hippoboscoidea, Streblidae, Nycteribiidae)
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The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum
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Analysis of influenza viruses from patients clinically suspected of infection with an oseltamivir resistant virus during the 2009 pandemic in the United States
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Evolution of highly pathogenic avian influenza (H5N1) virus populations in Vietnam between 2007 and 2010
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Association of nucleotide polymorphisms within the O-antigen gene cluster of Escherichia coli O26, O45, O103, O111, O121, and O145 with serogroups and genetic subtypes
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HIV type 1 gag genetic diversity among antenatal clinic attendees in North Rift Valley, Kenya
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Newborn screening for critical congenital heart disease: Essential public health roles for birth defects monitoring programs
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Differential association of gene content polymorphisms of killer cell immunoglobulin-like receptors with placental malaria in HIV- and HIV+ mothers
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Critical role of an antiviral stress granule containing RIG-I and PKR in viral detection and innate immunity
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A real-time PCR assay for HPV52 detection and viral load quantification
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Urinary naphthol metabolites and chromosomal aberrations in 5-year-old children
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Evidence of purifying selection on merozoite surface protein 8 (MSP8) and 10 (MSP10) in Plasmodium spp
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A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed
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Virological and molecular characterization of a simian human immunodeficiency virus (SHIV) encoding the envelope and reverse transcriptase genes from HIV-1
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Utility of multiplex ligation-dependent probe amplification (mlpa) for hemophilia mutation screening
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Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection
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Rapid detection of microbial DNA by a novel isothermal genome exponential amplification reaction (GEAR) assay
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Decision analysis, economic evaluation, and newborn screening: challenges and opportunities
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Evolution of the hepatitis E virus polyproline region: order from disorder
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Novel genetic variation identified at fixed loci in ORF62 of the Oka varicella vaccine and in a case of vaccine-associated herpes zoster
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Sensitive and specific detection of Trypanosoma cruzi DNA in clinical specimens using a multi-target real-time PCR approach
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Genome-wide association study of glioma and meta-analysis
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Genetic backgrounds of the Plasmodium falciparum chloroquine resistant transporter (pfcrt) alleles in Pakistan
Rawasia WF, Sridaran S, Patel JC, Abdallah J, Ghanchi NK, Barnwell JW, Escalante AA, Udhayakumar V, Beg MA. Infect Genet Evol. 2012 Mar;12(2):278-81.

Estrogen-related genes and their contribution to racial differences in breast cancer risk
Reding KW, Chen C, Lowe K, Doody DR, Carlson CS, Chen CT, Houck J, Weiss LK, Marchbanks PA, Bernstein L, Spirtas R, McDonald JA, Strom BL, Burkman RT, Simon MS, Liff JM, Daling JR, Malone KE. Cancer Causes Control. 2012 May;23(5):671-81.

Genotyping of Candida parapsilosis from three neonatal intensive care units (NICUs) using a panel of five multilocus microsatellite markers: broad genetic diversity and a cluster of related strains in one NICU
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The prevalence of HLA-B27 in the US: data from the US National Health and Nutrition Examination Survey, 2009
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Comparison of DNA extraction methodologies used for assessing fungal diversity via ITS sequencing
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Genomic basis of a polyagglutinating isolate of Neisseria meningitidis
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Comparison of Ahlstrom grade 226, Munktell TFN, and Whatman 903 filter papers for dried blood spot (DBS) specimen collection and subsequent HIV-1 viral load and drug-resistance genotyping analysis
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Trends in Population-Based Studies of Human Genetics in Infectious Diseases
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Dried blood spot specimens are a suitable alternative sample type for HIV-1 viral load measurement and drug resistance genotyping in patients receiving first-line antiretroviral therapy
Rottinghaus EK, Ugbena R, Diallo K, Bassey O, Azeez A, Devos J, Zhang G, Aberle-Grasse J, Nkengasong J, Yang C. Clin Infect Dis. 2012 Apr;54(8):1187-95.

Re-emergence and decline of dengue virus serotype 3 in Puerto Rico
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Isolation and phylogenetic analysis of Bartonella species from wild carnivores of the suborder Caniformia in Japan
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A report template for molecular genetic tests designed to improve communication between the clinician and laboratory
Scheuner MT, Hilborne L, Brown J, Lubin IM. Genet Test Mol Biomarkers. 2012 Jul;16(7):761-9.

Opportunities and challenges associated with clinical diagnostic genome sequencing: a report of the association for molecular pathology
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How can we stimulate translational research in cancer genomics beyond bench to bedside?
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No interactions between previously associated 2-hour glucose gene variants and physical activity or BMI on 2-hour glucose levels
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Prevalence of CGG expansions of the FMR1 gene in a US population-based sample
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Chronic beryllium disease, HLA-DPB1, and the DP peptide binding groove
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Evaluation of polymerase chain reaction assays for the diagnosis of Trichomonas vaginalis infection in Russia
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Using PCR-based detection and genotyping to trace Streptococcus salivarius meningitis outbreak strain to oral flora of radiology physician assistant
Srinivasan V, Gertz RE, Shewmaker PL, Patrick S, Chitnis AS, O'Connell H, Benowitz I, Patel P, Guh AY, Noble-Wang J, Turabelidze G, Beall B. PLoS One. 2012 ;7(2):e32169.

Experiences from the shiga toxin-producing escherichia coli O104:H4 outbreak in Germany and research needs in the field, Berlin, 28-29 November 2011
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Performance of commercial reverse line blot assays for HPV genotyping
Steinau M, Onyekwuluje JM, Scarbrough MZ, Unger ER, Dillner J, Zhou T. J Clin Microbiol. 2012 Feb 22.

Detection of pathogenic Leptospira spp. through real-time PCR (qPCR) targeting the lipL32 gene
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Dengue viremia in blood donors identified by RNA and detection of dengue transfusion transmission during the 2007 dengue outbreak in Puerto Rico
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Chronic occupational exposure to arsenic induces carcinogenic gene signaling networks and neoplastic transformation in human lung epithelial cells
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Prevalence of the 23S rRNA A2058G point mutation and molecular subtypes in Treponema pallidum in the United States, 2007 to 2009
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Varenicline for smoking cessation: nausea severity and variation in nicotinic receptor genes
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Convergence and coevolution of Hepatitis B virus drug resistance
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Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade
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Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus
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Testing the feasibility of a National Spina Bifida Patient Registry
Thibadeau JK, Ward EA, Soe MM, Liu T, Swanson M, Sawin KJ, Freeman KA, Castillo H, Rauen K, Schechter MS. Birth Defects Res A Clin Mol Teratol. 2012 Nov 2

A distinct lineage of influenza A virus from bats
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Health behaviors and cancer screening among Californians with a family history of cancer
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Pooling nasopharyngeal/throat swab specimens to increase testing capacity for influenza viruses by PCR
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High SNP density in the blacklegged tick, Ixodes scapularis, the principal vector of Lyme disease spirochetes
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The genetic match between vaccine strains and circulating seasonal influenza A viruses in Vietnam, 2001-2009
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A smoking-associated 7-gene signature for lung cancer diagnosis and prognosis
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Multilocus sequence subtyping and genetic structure of Cryptosporidium muris and Cryptosporidium andersoni
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Simian genogroup I picobirnaviruses: prevalence, genetic diversity, and zoonotic potential
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Tumor necrosis factor -308 polymorphism (rs1800629) is associated with mortality and ventilator duration in 1057 Caucasian patients
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Molecular genetic testing for fragile X syndrome: laboratory performance on the College of American Pathologists proficiency surveys (2001-2009)
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First reports of human rotavirus G8P[4] gastroenteritis in the United States
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Mutational analysis of the West Nile virus NS4B protein
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Presence, genetic variability, and potential significance of "Candidatus Midichloria mitochondrii" in the lone star tick Amblyomma americanum
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Evolutionary history and phylodynamics of influenza A and B neuraminidase (NA) genes inferred from large-scale sequence analyses
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Prospective study of methylenetetrahydrofolate reductase (MTHFR) variant C677T and risk of all-cause and cardiovascular disease mortality among 6000 US adults
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Genetic variants in antioxidant genes are associated with diisocyanate-induced asthma
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