|
|
Research
Coxiella burnetii Genotyping
Olga Glazunova,* Véronique Roux,* Olga Freylikman,*† Zuzana Sekeyova,*‡
Ghislain Fournous,* Judith Tyczka,§ Nikolai Tokarevich,† Elena Kovacova,‡
Thomas J. Marrie,¶ and Didier Raoult*
*Unité des Rickettsies, Marseille, France; †Pasteur Institute of Epidemiology
and Microbiology, Saint Petersburg, Russia; ‡Institute of Virology SAS,
Bratislava, Slovak Republic; §University of Giessen, Giessen, Germany;
and ¶University of Alberta Department of Medicine, Edmonton, Alberta,
Canada
|
Appendix Table 1. Isolates
of Coxiella burnetii studied
|
|
|
Isolate
|
Origin
|
Disease, symptoms, clinical status
|
Geographicsource
|
ST (sequence type)
|
Plasmid sequence type
|
|
|
CB108
|
Human blood
|
Acute
|
Marseille, France, 2001
|
1
|
QpDV
|
|
CB1
|
Human heart valve
|
Chronic
|
Istres, France, 1989
|
1
|
QpDV
|
|
CB3
|
Human heart valve
|
Chronic
|
Marseille, France
|
1
|
QpDV
|
|
CB36
|
Human placenta
|
Abortion
|
Martigues, France, 1992
|
1
|
QpDV
|
|
CB38
|
Human blood
|
Acute
|
Marseille, France, 1992
|
1
|
QpDV
|
|
CB41
|
Human heart valve
|
Chronic
|
Marseille, France, 1993
|
1
|
QpDV
|
|
CB60
|
Human blood
|
Acute
|
Marseille, France, 1996
|
1
|
QpDV
|
|
CB63
|
Human heart valve
|
Chronic
|
Marseille, France, 1994
|
1
|
QpDV
|
|
CB75
|
Human blood
|
Chronic
|
Marseille, France, 1998
|
1
|
QpDV
|
|
CB82
|
Human blood
|
Acute
|
Marseille, France, 1999
|
1
|
QpDV
|
|
CB86
|
Human blood
|
Chronic
|
Marseille, France, 1999
|
1
|
QpDV
|
|
CB87
|
Human placenta
|
Abortion
|
Martigues, France, 1999
|
1
|
QpDV
|
|
CB89
|
Human placenta
|
Abortion
|
Martigues, France, 2000
|
1
|
QpDV
|
|
CB94
|
Human blood
|
Acute
|
Aix en Provence, France, 2000
|
1
|
QpDV
|
|
CB97
|
Human blood
|
Acute
|
Marseille, France, 2000
|
1
|
QpDV
|
|
CB110
|
Human blood
|
Chronic
|
Marseille, France, 2002
|
1
|
QpDV
|
|
CB28
|
Human blood
|
Acute
|
Salon de Provence, France, 1992
|
1
|
QpDV
|
|
CB26
|
Human blood
|
Acute
|
Marseille, France, 1992
|
1
|
QpDV
|
|
CB64
|
Human blood
|
Acute
|
Martigues, France, 1996
|
1
|
QpDV
|
|
CB39
|
Human blood
|
Acute
|
Marseille, France, 1992
|
2
|
QpDV
|
|
RT-1140
|
Human blood
|
Pneumonia
|
Krimea, Ukrain 1954
|
2
|
QpDV
|
|
RT-Schperling
|
Human blood
|
Fever
|
Kyrgyzstan, 1955
|
2
|
QpDV
|
|
CB118
|
Human heart valve
|
Chronic
|
Marseille, France, 2004
|
3
|
QpDV
|
|
CB62
|
Human blood
|
Acute
|
Martigues, France, 1996
|
4
|
QpDV
|
|
CB20
|
Human blood
|
Acute
|
Salon de Provence, France, 1991
|
4
|
QpRS
|
|
CB51
|
Human placenta
|
Abortion
|
Madrid, Spain, 1996
|
4
|
QpDV
|
|
CB12
|
Human blood
|
Acute
|
Aix en Provence, France
|
4
|
QpDV
|
|
CB57
|
Human blood
|
Acute
|
Martigues, France, 1996
|
4
|
QpDV
|
|
CB54
|
Human blood
|
Acute
|
Aix en Provence, France, 1996
|
4
|
QpDV
|
|
CB111
|
Human heart valve
|
Chronic
|
Marseille, France, 2003
|
5
|
QpRS
|
|
CB35
|
Human heart valve
|
Chronic
|
Paris, France, 1992
|
5
|
QpRS
|
|
CB45
|
Human heart valve
|
Chronic
|
Paris, France, 1993
|
6
|
QpRS
|
|
CB43
|
Human heart valve
|
Chronic
|
Paris, France, 1993
|
7
|
QpRS
|
|
Leningrad-2
|
Human blood
|
-
|
Leningrad, Russia, 1955
|
7
|
QpRS
|
|
Leningrad-4
|
Human blood
|
-
|
Leningrad, Russia, 1957
|
7
|
QpRS
|
|
CB10
|
Human heart valve
|
Chronic aneurysm
|
Grenoble, France
|
8
|
QpRS
|
|
CB9
|
Human blood
|
Chronic
|
Lyon, France
|
8
|
QpRS
|
|
CB31
|
Human heart valve
|
Chronic
|
Marseille, France, 1992
|
8
|
QpRS
|
|
CB34
|
Human blood
|
Chronic
|
Marseille, France, 1992
|
8
|
QpRS
|
|
CB44
|
Human heart valve
|
Chronic
|
Créteil, France, 1993
|
8
|
QpRS
|
|
CB53
|
Aneurysm
|
Chronic
|
Marseille, France, 1995
|
8
|
QpRS
|
|
CB61
|
Valvular prosthesis
|
Chronic
|
Marseille, France, 1996
|
8
|
QpRS
|
|
CB70
|
Human heart valve
|
Chronic
|
Grenoble, France, 1997
|
8
|
QpRS
|
|
CB71
|
Valvular prosthesis
|
Chronic
|
Saint-Laurent du Var, France, 1997
|
8
|
QpRS
|
|
CB73
|
Valvular prosthesis
|
Chronic
|
Marseille, France, 1998
|
8
|
QpRS
|
|
CB81
|
Human heart valve
|
Chronic
|
Madrid, Spain, 1999
|
8
|
QpRS
|
|
CB91
|
Valvular prosthesis
|
Chronic
|
Marseille, France, 2000
|
8
|
QpRS
|
|
CB93
|
Human placenta
|
Abortion
|
Dreux, France, 2000
|
8
|
QpRS
|
|
CB95
|
Human blood
|
Chronic
|
Marseille, France, 2000
|
8
|
QpRS
|
|
CB116
|
Aneurysm
|
Chronic
|
Marseille, France, 2003
|
8
|
QpRS
|
|
CB107
|
Human heart valve
|
Chronic
|
Tours, France, 2001
|
8
|
QpRS
|
|
CB96
|
Human heart valve
|
Chronic
|
Marseille, France, 2000
|
8
|
QpRS
|
|
CB114
|
Human heart valve
|
Chronic
|
Marseille, France, 2003
|
8
|
QpRS
|
|
CB15
|
Human heart valve
|
Chronic
|
Lyon, France, 1991
|
8
|
QpRS
|
|
CB47
|
Human heart valve
|
Chronic
|
Barcelone, Spain, 1994
|
8
|
QpRS
|
|
CB99
|
Human heart valve
|
Chronic
|
Marseille, France, 2000
|
8
|
QpRS
|
|
CB106
|
Human heart valve
|
Chronic
|
Toulouse, France, 2001
|
8
|
QpRS
|
|
CB79
|
Human heart valve
|
Chronic
|
Paris, France, 1999
|
8
|
QpRS
|
|
CB98
|
Human heart valve
|
Chronic
|
Marseille, France, 2000
|
8
|
QpRS
|
|
CB83
|
Goat placenta
|
Abortion
|
Newfoundland, USA, 1999
|
8
|
QpRS
|
|
CB8
|
Human heart valve
|
Chronic
|
Marseille, France, 1990
|
8
|
QpRS
|
|
Priscilla
|
Aborted goat
|
Abortion
|
Montana, USA, 1980
|
8
|
QpRS
|
|
CB117
|
Human heart valve
|
Chronic
|
Marseille, France, 2004
|
8
|
QpRS
|
|
CB32
|
Human heart valve
|
Chronic
|
Lyon, France, 1992
|
9
|
QpRS
|
|
CB92
|
Human heart valve
|
Chronic
|
Marseille, France, 2000
|
9
|
QpRS
|
|
CB68
|
Pigeon excrement
|
–
|
Marseille, France, 1996
|
9
|
QpRS
|
|
CB49
|
Human heart valve
|
Chronic
|
Marseille, France, 1994
|
9
|
QpRS
|
|
CB65
|
Human heart valve
|
Chronic
|
Marseille, France, 1996
|
10
|
QpRS
|
|
CB103
|
Ewe placenta
|
Abortion
|
Marseille, France, 2001
|
10
|
QpRS
|
|
CB13
|
Human blood
|
Chronic
|
Paris, France
|
11
|
QpH1/QpDV
|
|
CB40
|
Human heart valve
|
Chronic
|
Paris, France, 1993
|
11
|
QpH1
|
|
CB46
|
Valvular prosthesis
|
Chronic
|
Paris, France, 1993
|
11
|
QpH1
|
|
CB5
|
Human blood
|
Chronic
|
Paris, France, 1990
|
12
|
QpH1
|
|
CB6
|
Human blood
|
Chronic
|
Paris, France
|
12
|
QpH1
|
|
CB42
|
Valvular prosthesis
|
Chronic
|
Toulouse, France, 1993
|
12
|
QpH1
|
|
CB52
|
Valvular prosthesis
|
Chronic
|
Paris, France, 1995
|
12
|
QpH1
|
|
CB56
|
Human heart valve
|
Chronic
|
Paris, France, 1996
|
12
|
QpH1
|
|
CB58
|
Spleen abscess
|
–
|
Lyon, France, 1996
|
12
|
QpH1
|
|
CB76
|
Human heart valve
|
Chronic
|
Paris, France, 1998
|
12
|
QpH1
|
|
CB105
|
Human heart valve
|
Chronic
|
Montpellier, France, 2001
|
12
|
QpH1
|
|
CB112
|
Human heart valve
|
Chronic
|
Zurich, Switzerland, 2003
|
12
|
QpH1
|
|
CB109
|
Human heart valve
|
Chronic
|
Berlin, Germany, 2002
|
12
|
QpH1
|
|
CB113
|
Goat placenta
|
Abortion
|
Albi, France, 2003
|
12
|
QpH1
|
|
CB33
|
Human heart valve
|
Chronic
|
Clermont-Ferrand, France, 1992
|
12
|
QpH1
|
|
CB55
|
Vegetation
|
Chronic
|
Paris, France, 1996
|
12
|
QpH1
|
|
CB2
|
Human blood
|
Immunodepression
|
Toulouse, France,
|
13
|
QpH1
|
|
CB69
|
Vegetation
|
Chronic
|
Toulouse, France, 1996
|
13
|
QpH1
|
|
CB85
|
Human blood
|
Chronic
|
Tours, France, 1999
|
14
|
QpH1
|
|
CB74
|
Valvular prosthesis
|
Chronic
|
Toulouse, France, 1998
|
14
|
QpH1
|
|
CB59
|
Aneurysm
|
Chronic aneurysm
|
Saint-Etienne, France, 1996
|
14
|
QpH1
|
|
CB80
|
Node
|
Chronic
|
Niort, France, 1999
|
14
|
QpH1
|
|
Z3055
|
Ewe placenta
|
Abortion
|
Germany
|
14
|
QpH1
|
|
CB102
|
Valvular prosthesis
|
Chronic
|
Poitiers, France, 2001
|
15
|
QpH1
|
|
CB11
|
Human blood
|
Acute
|
Marseille, France
|
16
|
QpH1
|
|
CB23
|
Human blood
|
Chronic
|
Clermont-Ferrand, France, 1988
|
16
|
QpH1
|
|
Brasov
|
Human
|
Acute
|
Romania
|
16
|
QpH1
|
|
Bangui
|
Human blood
|
Acute
|
Central Africa
|
16
|
QpH1
|
|
California
|
Cow milk
|
Persistent
|
California, USA, 1947
|
16
|
QpH1
|
|
CB25
|
Human blood
|
Acute
|
Paris, France, 1991
|
16
|
QpH1
|
|
Dyer
|
Human blood
|
Acute
|
USA, 1938
|
16
|
QpH1
|
|
Ohio
|
Cow milk
|
Persistent
|
Ohio, USA, 1956
|
16
|
QpH1
|
|
Nine Mile
|
Tick
|
–
|
Montana, USA, 1935
|
16
|
QpH1
|
|
CS-KL 9
|
Ixodes ricinus
|
–
|
Slovakia, 1989
|
16
|
QpH1
|
|
Z-2775/90
|
Cow placenta
|
Abortion
|
Germany, 1990
|
16
|
QpH1
|
|
J-1
|
Cow milk
|
–
|
Japan
|
16
|
QpH1
|
|
J-3
|
Cow milk
|
–
|
Japan
|
16
|
QpH1
|
|
J-27
|
Cow milk
|
–
|
Japan
|
16
|
QpH1
|
|
J-60
|
Cow milk
|
–
|
Japan
|
16
|
QpH1
|
|
J-82
|
Cow milk
|
–
|
Japan
|
16
|
QpH1
|
|
Hardthof
|
Cow milk
|
–
|
Germany, 1990
|
16
|
QpH1
|
|
CB77
|
Human heart valve
|
Chronic
|
Paris, France, 1998
|
17
|
QpH1
|
|
CB100
|
Human blood
|
Chronic
|
Strasbourg, France
|
18
|
QpH1
|
|
Henzerling
|
Human blood
|
Acute
|
Italy/Slovakia, 1945
|
18
|
QpH1
|
|
Balaceanu
|
Human
|
Acute
|
Romania
|
18
|
QpH1
|
|
Geier
|
Human
|
Acute
|
Romania
|
18
|
QpH1
|
|
Heizberg
|
Human
|
Acute
|
Greece
|
18
|
QpH1
|
|
Cs-Florian
|
Human blood
|
–
|
Slovakia, 1956
|
18
|
QpH1
|
|
Z-3464/92
|
Goat placenta
|
Abortion
|
Germany, 1992
|
18
|
QpH1
|
|
Z-4488/93
|
Ewe placenta
|
Abortion
|
Germany, 1993
|
18
|
QpH1
|
|
Z-349-36/94
|
Ewe placenta
|
–
|
Germany, 1994
|
18
|
QpH1
|
|
München
|
Sheep
|
–
|
München, Germany, 1969
|
18
|
QpH1
|
|
CB119
|
Human heart valve
|
Chronic
|
Senegal, 2004
|
19
|
QpH1
|
|
CB48
|
Human placenta
|
Abortion
|
Grenoble, France, 1994
|
20
|
QpH1
|
|
CB50
|
Valvular prosthesis
|
Chronic
|
Paris, France, 1994
|
20
|
QpH1
|
|
CB66
|
Aneurysm
|
Chronic aneurysm
|
Marseille, France, 1996
|
20
|
QpH1
|
|
CB72
|
Valvular prosthesis
|
Chronic
|
Paris, France, 1996
|
20
|
QpH1
|
|
CB78
|
Valvular prosthesis
|
Chronic
|
Marseille, France, 1998
|
20
|
QpH1
|
|
CB88
|
Human heart valve
|
Chronic
|
Lyon, France, 1999
|
20
|
QpH1
|
|
CB90
|
Human heart valve
|
Chronic
|
Lyon, France,2000
|
20
|
QpH1
|
|
Z-3567/92
|
Cow placenta
|
Abortion
|
Germany, 1992
|
20
|
QpH1
|
|
Dugway 5J108-111
|
Rodent
|
–
|
Utah, USA, 1958
|
20
|
QpH1
|
|
CB4
|
Human blood
|
Chronic
|
Montpellier, France,1988
|
21
|
QpH1
|
|
CB7
|
Human heart valve
|
Chronic Aneurysm
|
Marseille, France
|
21
|
QpH1
|
|
Q229
|
Human heart valve
|
Chronic
|
Nova Scotia, Canada, 1982
|
21
|
QpH1
|
|
Dog CB
|
Dog uterus
|
–
|
Nova Scotia, Canada, 1995
|
21
|
|
|
Poker Cat
|
Cat
|
–
|
Nova Scotia, Canada, 1986
|
21
|
|
|
CBNSC1
|
Cat
|
–
|
Nova Scotia, Canada, 1986
|
21
|
QpH1
|
|
Dog ut Ad
|
Dog uterus
|
–
|
Nova Scotia, Canada, 1989
|
21
|
|
|
CB115
|
Human heart valve
|
Chronic
|
Nova Scotia, Canada, 2003
|
21
|
|
|
Q212
|
Human heart valve
|
Chronic
|
Nova Scotia, Canada, 1981
|
21
|
|
|
Scurry Q217
|
Human liver biopsy
|
Hepatitis
|
Rocky Mountain, USA
|
21
|
|
|
48
|
Haemaphysalis punctata
|
–
|
Slovakia, 1970
|
22
|
QpH1
|
|
Irkutsk
|
Tick
|
–
|
Irkutsk, Russia1969
|
23
|
QpH1
|
|
Uzbekistan
|
Cow placenta
|
–
|
Uzbekistan, 1971
|
23
|
QpH1
|
|
1894
|
Liver and spleen of wild bird
|
–
|
Czechoslovakia, 1954
|
23
|
QpH1
|
|
Kazakhstan-6
|
Dermacentor marginatus
|
–
|
Kazakhstan, 1969
|
23
|
QpH1
|
|
K-261-Louga
|
Cow milk
|
–
|
Leningrad, Russia, 1959
|
23
|
QpH1
|
|
Kazakhstan -5
|
Dermacentor hirundinis
|
–
|
Kazakhstan, 1969
|
23
|
QpH1
|
|
Russet mouse
|
Russet mouse viscera
|
–
|
Pskov, Russia
|
23
|
QpH1
|
|
II/IA
|
Dermacentor marginatus
|
–
|
Slovakia, 1972
|
23
|
QpH1
|
|
IXO
|
Ixodes ricinus
|
–
|
Czech Republic, 1957
|
23
|
QpH1
|
|
Mongolia-2
|
Dermacentor nuttalli
|
–
|
Mongolia, 1985
|
23
|
QpH1
|
|
CS-27
|
Dermacentor marginatus
|
–
|
Slovakia, 1972
|
23
|
QpH1
|
|
Oufa-1
|
Human blood
|
–
|
Oufa, Russia
|
23
|
QpH1
|
|
Oufa-2
|
Ewe placenta
|
Abortion
|
Oufa, Russia
|
23
|
QpH1
|
|
Louga-3
|
Ixodes ricinus
|
–
|
Leningrad, Russia, 1962
|
23
|
QpH1
|
|
Louga-2
|
Ixodes ricinus
|
–
|
Leningrag, Russia, 1959
|
23
|
QpH1
|
|
Louga-1
|
Cimex lecturalius
|
–
|
Leningrad, Russia, 1959
|
23
|
QpH1
|
|
Louga rodent
|
Apodemus flavicollis viscera
|
–
|
Leningrad, Russia, 1958
|
23
|
QpH1
|
|
Mongolia-1
|
Dermacentor silvarum
|
–
|
Mongolia, 1984
|
23
|
QpH1
|
|
Vologda-2
|
Human blood
|
–
|
Vologda, Russia, 1987
|
23
|
QpH1
|
|
8931 F10
|
Cow placenta
|
Abortion
|
Germany
|
24
|
QpH1
|
|
Grita
|
-
|
–
|
Germany, 1940-1945
|
25
|
QpH1
|
|
M-44
|
Vaccine
|
–
|
Russia
|
25
|
QpH1
|
|
Kazakhstan-4
|
Fly
|
–
|
Kazakhstan, 1965
|
25
|
QpH1
|
|
Termez
|
Human blood
|
–
|
Uzbekistan, 1952
|
26
|
QpRS
|
|
Z2534
|
Goat placenta
|
Abortion
|
Austria
|
27
|
QpH1
|
|
Kazakhstan-1
|
Ewe placenta
|
Abortion
|
Kazakhstan
|
28
|
QpRS
|
|
Kazakhstan-2
|
Cow milk
|
–
|
Kazakhstan, 1962
|
28
|
QpRS
|
|
Kazakhstan-3
|
Hyalomma tick
|
–
|
Kazakhstan, 1962
|
28
|
QpRS
|
|
Tcheredov
|
Human blood
|
–
|
Kazakhstan, 1965
|
28
|
QpRS
|
|
Henzerling-r *
|
Human blood
|
–
|
Italy, 1945 / Slovakia,
|
29
|
QpH1
|
|
Namibia
|
Goat
|
–
|
Namibia, 1991
|
30
|
QpRS
|
|
|
*Strain resistant to chlortetracycline obtained
by passages in embryonated hen's eggs in presence of increasing
doses of chlortetracycline.
|
|
Appendix Table 2. Primer
used in djlA, com1 and QpH1 and QpRS plasmid targeted sequences
for PCR amplification and sequencing
|
|
|
Primer
|
Nucleotide sequence 5´ →
3´
|
Position in the gene
|
|
|
|
djlA-1*†
|
CGGTGATGAACTGGATTGG
|
–5 – 15
|
|
|
djlA-2†
|
ATTGACCTGACGCGCTTGACG
|
266 –247
|
|
djlA-3†
|
GGCAACGCAAGACCCCCGTG
|
579 – 598
|
|
djlA-4*†
|
AACCATGCTTCGCACCTTAC
|
810 –791
|
|
com-1*†
|
CGTGAAGAACCGTTTGACTG
|
3 – 22
|
|
com-2†
|
TGAGGATTGCCTGCCACTGG
|
284 – 265
|
|
com-3†
|
GCGCTGCTCAGTGTCGACGG
|
490 – 509
|
|
com-4*†
|
CTTTTCTACCCGGTCGATTTC
|
759 – 739
|
|
|
Primer
|
Nucleotide sequence 5´ →
3´
|
Position in the plasmid
|
ORF
|
|
|
QpH11
|
TGACAAATAGAATTTCTTCATTTTGATG
|
QpH1 (gb:AE016829) 15332 –15359
|
Spacer between two hypothetical proteins
|
|
QpH12
|
GCTTATTTTCTTCCTCGAATCTATGAAT
|
QpH1 (gb:AE016829) 168348 – 16375
|
Spacer between two hypothetical proteins
|
|
QpRSO1
|
CTCGTACCCAAAGACTATGAATATATCC
|
QpRS gb:Y15898) 14761 –14734
|
Hypothetical protein
|
|
QpRS02
|
CACATTGGGTATCGTACTGTCCCT
|
QpRS gb:Y15898) 14398 – 14321
|
Hypothetical protein
|
|
QpDV1f
|
ATGAGAGAAGAGCAGCCGCT
|
QpRS (gb:Y15898) 9889 – 9908
|
Hypothetical protein
|
|
QpDV1r
|
TCAATGATCCGATGTGCGTTT
|
QpH1 (gb:Y15898) 10634 –10614
|
Hypothetical protein
|
|
|
*Oligonucleotide primer used for PCR amplification.
|
|
†Oligonucleotide primer used for sequencing.
|
|
Appendix Table 3. Accession
numbers of nucleotide sequences deposited in GenBank
|
|
| |
Cox 2
|
Cox 5
|
Cox 18
|
Cox 20
|
Cox 22
|
Cox 37
|
Cox 51
|
Cox 56
|
Cox 57
|
Cox 61
|
|
|
ST1 (CB26)
|
AY492067
|
AY495357
|
AY502819
|
AY502857
|
AY502899
|
AY502623
|
AY502735
|
AY502777
|
AY502674
|
AY512785
|
|
ST2 (CB39)
|
AY574327
|
AY574328
|
AY574329
|
AY574330
|
AY574331
|
AY574332
|
AY574333
|
AY574334
|
AY574335
|
AY574336
|
|
ST3 (CB118)
|
AY574337
|
AY574338
|
AY574339
|
AY574340
|
AY574341
|
AY574342
|
AY574343
|
AY574344
|
AY574345
|
AY574346
|
|
ST4 (CB20)
|
AY492065
|
AY495355
|
AY502817
|
AY502855
|
AY502897
|
AY502621
|
AY502733
|
AY502775
|
AY502673
|
AY512784
|
|
ST5 (CB35)
|
AY494735
|
AY495360
|
AY502822
|
AY502860
|
AY502902
|
AY502626
|
AY502738
|
AY502780
|
AY502677
|
AY512788
|
|
ST6 (CB45)
|
AY494734
|
AY502720
|
AY502841
|
AY502881
|
AY502921
|
AY502645
|
AY502761
|
AY502801
|
AY502709
|
AY512819
|
|
ST7 (CB43)
|
AY574307
|
AY574308
|
AY574309
|
AY574310
|
AY574311
|
AY574312
|
AY574313
|
AY574314
|
AY574315
|
AY574316
|
|
ST8 (Priscilla)
|
AY596174
|
AY502715
|
AY502837
|
AY502875
|
AY502883
|
AY502642
|
AY502752
|
AY502797
|
AY502681
|
AY596175
|
|
ST9 (CB68)
|
AY494733
|
AY502721
|
AY502842
|
AY502882
|
AY502922
|
AY502646
|
AY502762
|
AY502802
|
AY502710
|
AY512820
|
|
ST10 (CB103)
|
AY492058
|
AY495348
|
AY502810
|
AY502850
|
AY502890
|
AY502613
|
AY502728
|
AY502770
|
AY502688
|
AY512805
|
|
ST11 (CB13)
|
AY575668
|
AY575669
|
AY575670
|
AY575671
|
AY575672
|
AY575673
|
AY575674
|
AY575675
|
AY575676
|
AY575677
|
|
ST12 (CB33)
|
AY492069
|
AY495359
|
AY502821
|
AY502859
|
AY502901
|
AY502625
|
AY502737
|
AY502779
|
AY502676
|
AY512787
|
|
ST13 (CB2)
|
AY575653
|
AY575654
|
AY575655
|
AY575656
|
AY575657
|
AY575658
|
AY575659
|
AY575660
|
AY575661
|
AY575662
|
|
ST14 (CB85)
|
AY575643
|
AY575644
|
AY575645
|
AY575646
|
AY575647
|
AY575648
|
AY575649
|
AY575650
|
AY575651
|
AY575652
|
|
ST15 (CB102)
|
AY492057
|
AY495347
|
AY502809
|
AY502849
|
AY502889
|
AY502612
|
AY502755
|
AY502769
|
AY502687
|
AY512794
|
|
ST16 (Ohio)
|
AY494725
|
AY502712
|
AY502834
|
AY502872
|
AY502916
|
AY502640
|
AY502748
|
AY502794
|
AY502707
|
AY512816
|
|
ST17 (CB77)
|
AY574325
|
AY574326
|
AY574317
|
AY574318
|
AY574319
|
AY574320
|
AY574321
|
AY574322
|
AY574323
|
AY574324
|
|
ST18 (Henzerling)
|
AY494723
|
AY495369
|
AY502832
|
AY502870
|
AY502914
|
AY502638
|
AY502746
|
AY502792
|
AY502701
|
AY512814
|
|
ST19 (CB119)
|
AY575633
|
AY575634
|
AY575635
|
AY575636
|
AY575637
|
AY575638
|
AY575639
|
AY575640
|
AY575641
|
AY575642
|
|
ST20 (CB88)
|
AY492072
|
AY502719
|
AY502825
|
AY502863
|
AY502905
|
AY502629
|
AY502759
|
AY502783
|
AY502696
|
AY512798
|
|
ST21 (Q212)
|
AY494729
|
AY502716
|
AY502838
|
AY502876
|
AY502918
|
AY502643
|
AY502753
|
AY502798
|
AY502682
|
AY512793
|
|
ST22 (48)
|
AY864229
|
AY864230
|
AY864231
|
AY864232
|
AY864233
|
AY864234
|
AY864235
|
AY864236
|
AY864237
|
AY864238
|
|
ST23 (Irkutsk)
|
AY864239
|
AY864240
|
AY864241
|
AY864242
|
AY864243
|
AY864244
|
AY864245
|
AY864246
|
AY864247
|
AY864248
|
|
ST24 (8931 F10)
|
AY864199
|
AY864200
|
AY864201
|
AY864202
|
AY864203
|
AY864204
|
AY864205
|
AY864206
|
AY864207
|
AY864208
|
|
ST25 (Grita)
|
AY864209
|
AY864210
|
AY864211
|
AY864212
|
AY864213
|
AY864214
|
AY864215
|
AY864216
|
AY864217
|
AY864218
|
|
ST26 (Termez)
|
AY864219
|
AY864220
|
AY864221
|
AY864222
|
AY864223
|
AY864224
|
AY864225
|
AY864226
|
AY864227
|
AY864228
|
|
ST27 (Z2534)
|
AY864249
|
AY864250
|
AY864251
|
AY864252
|
AY864253
|
AY864254
|
AY864255
|
AY864256
|
AY864257
|
AY864258
|
|
ST28 (Kazakhstan-2)
|
AY864259
|
AY864260
|
AY864261
|
AY864262
|
AY864263
|
AY864264
|
AY864265
|
AY864266
|
AY864267
|
AY864268
|
|
ST29 (Henzerling-r)
|
AY864269
|
AY864270
|
AY864271
|
AY864272
|
AY864273
|
AY864274
|
AY864275
|
AY864276
|
AY864277
|
AY864278
|
|
ST30 (Namibia)
|
AY864279
|
AY864280
|
AY864281
|
AY864282
|
AY864283
|
AY864284
|
AY864285
|
AY864286
|
AY864287
|
AY864288
|
|
|
